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Hello velocyto,
I transfer 10X bam file into loom file by velocyto.py and use Scanpy to do cell clustering. However, when doing the data processing by Scanpy, I found there are no mito genes included…
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Hello,
I am currently analyzing bulk, nuclear RNA-seq data using this [tutorial](https://www.kallistobus.tools/tutorials/kb_nucleus/python/kb_single_nucleus/)
I have run the following command …
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Hi,
In fluid mechanics, we use both flow vector and streamline to represent flow motion. All the streamlines have the same thickness and streamline density is a measure for the magnitude of the flow…
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Hi, I'm trying to convert Seurat objects to loom files but I'm confused as to which functions work now and which functions are deprecated. I first tried the ```as.loom()``` function described in this …
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Hello and thanks for this great package and the very helpful tutorials!
I was generating Heatmap expression cascade plots to visualize temporal activation of genes along trajectories.
I not…
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Hello Theis lab,
I am new to Scevelo. I have just generated loom files that can be successfully read using scevelo.
We would like to subset the objects based on either cellular-barcodes or gen…
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Hi,
Thank you for creating an interesting tool. I am running into a following error when I ran latent time. Could you please guide me through this error.
```python
mv.latent_time(adata_result)
…
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https://mp.weixin.qq.com/s/1Dju7DoLbkk-qYGRoqrBKg
ixxmu updated
11 months ago
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Hi,
I am a fresh user of scvelo and thanks for providing this useful tool! I run into this bug
```
Traceback (most recent call last):
File "/Users/kfang/miniconda3/envs/scvelo/lib/python3.9/si…
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I have been following the "CellRank beyond RNA velocity" vignette and I am currently stuck on the 'compute_projection' step. When I execute this, it says: "AttributeError: 'CytoTRACEKernel' object has…