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Hello,
Hope you're doing well! I was wondering if it would be possible in the future to support custom moltypes, e.g. if I wanted to do a riff on the Dayhoff alphabet where arginines were a special …
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what I did for [r0.12.1](https://github.com/sourmash-bio/sourmash/releases/tag/r0.12.1), based on [r0.12.0](https://github.com/sourmash-bio/sourmash/releases/tag/r0.12.0)
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# generate log of PRs
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it should be fairly easy to cluster gather matches into "species groupings", for e.g. doing combined sgc queries.
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so, belated realization that I suspect others saw coming a mile away, but...
once we can point at & direct load signatures in other databases, then we can do interesting things with metadata.
tl…
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per https://github.com/sourmash-bio/sourmash/issues/1386, we want to use test fixtures defined in conftest instead of decorators such as `@utils.in_tempdir` because test fixtures can be used in combin…
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In https://github.com/sourmash-bio/sourmash/pull/1837, we change `sourmash sig extract` to identify signatures to extract using manifest rows, and then have to convert the manifest rows into a manifes…
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Hi,
MAGpy seems to be the perfect tool for my metagenomic data analysis but I am unable to even install it. The manual says that after installing conda I should do the following:
`conda env creat…
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There's a confusing mess of loading functions in `sourmash_args.py` that's slowly converging as we simplify and refactor our Index handling code.
In no particular order,
there's **query loading …
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per https://github.com/sourmash-bio/sourmash/issues/1671#issuecomment-1077585283, we don't have a good way to write signatures to a single file from multiple processes. Such a thing would be nice, but…
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Hello! Thank you for your dedicated work on sourmash!
I've been closely following sourmash for taxonomy assignments and I'm keen on extracting specific sequences from my metagenomic datasets based …