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WatsonLab
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MAGpy
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
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building Database
#49
PabloArrow
opened
8 months ago
0
workflow rerun again and again
#48
wangjiawen2013
opened
11 months ago
0
Starting up MAGpy
#47
naturepoker
opened
2 years ago
6
Error in rule test_prodigal
#46
imonteroo
opened
2 years ago
1
checkm cannot overwrite the folder
#45
sneuensc
opened
2 years ago
1
python vs python3
#44
sneuensc
opened
2 years ago
1
Error in Run tests and install conda envs
#43
xiaochen2015
opened
2 years ago
1
installing magpy
#42
mars188
opened
2 years ago
3
installation issue for sourmash
#41
mars188
opened
2 years ago
10
WARNING: the sourmash compute command is DEPRECATED as of 4.0 and will be removed in 5.0.
#40
LiuYajing0914
closed
2 years ago
2
install issues
#39
spencer411
opened
2 years ago
6
Replace tabs with spaces in add_tax.py
#38
cezar77
opened
3 years ago
0
Update add_tax.py
#37
cezar77
opened
3 years ago
0
Cezar77 test scripts indentation
#36
cezar77
opened
3 years ago
0
Cezar77 patch 1
#35
cezar77
closed
3 years ago
0
Update MAGpy.json
#34
cezar77
closed
3 years ago
0
Update config.json
#33
cezar77
closed
3 years ago
0
error in test_checkm.py
#32
yb5339
opened
3 years ago
5
sourmash error
#31
yb5339
closed
3 years ago
3
Exiting because a job execution failed. Look above for error message
#30
zhibaosuo
closed
3 years ago
3
phylophlan.py: error: unrecognized arguments: -u {params.unn}
#29
arunkanth9
closed
3 years ago
4
phylophlan 3
#28
geo80
closed
3 years ago
2
Question about databases
#27
smb20200615
closed
3 years ago
2
usearch error
#26
mars188
closed
3 years ago
2
Error while running the test
#25
mars188
closed
3 years ago
2
install phylophlan
#24
chen318liang
closed
3 years ago
4
Error during "Looking for PhyloPhlAn proteins in input faa files"
#23
aparadaLP
closed
3 years ago
6
problems updating ete3 database
#22
aparadaLP
closed
3 years ago
2
phylophlan no longer available
#21
amojarro
closed
3 years ago
2
Sourcing directive bugfix and minor updates
#20
fmaguire
closed
3 years ago
1
error while running pfam
#19
shashankx
closed
4 years ago
2
re-run
#18
choumeijiao
closed
4 years ago
1
The incompatible packages with each other
#17
SarahIsme
closed
3 years ago
4
error in magpy3 test
#16
duvayu
closed
4 years ago
2
Snakemake test not working!
#15
susheelbhanu
closed
4 years ago
4
SyntaxError in line 66
#14
charlie-durant
closed
4 years ago
2
SLURM submission?
#13
GeoMicroSoares
closed
5 years ago
16
Diamond summary report fix to avoid argument list length issues
#12
halexand
closed
5 years ago
0
Argument list too long for rule `diamond_bin_summary`
#11
halexand
closed
5 years ago
2
Recommended hardware requirements
#10
slambrechts
closed
4 years ago
1
Tests are written for Python 2.7
#9
halexand
closed
5 years ago
1
Fixed print statements in test scripts to be comp with py35
#8
halexand
closed
5 years ago
0
miniconda permission/version error
#7
GeoMicroSoares
closed
4 years ago
7
MAGpy/envs/install.yaml is missing!!
#6
yoobios
closed
5 years ago
2
Conda takes a long time to resolve enviornments
#5
mw55309
closed
5 years ago
1
Seems promising but??
#4
pythseq
closed
5 years ago
3
Running a subset of jobs?
#3
adityabandla
closed
5 years ago
3
ResolvePackageNotFound issue with pplacer
#2
bstamps
closed
5 years ago
3
fixing typo
#1
wdecoster
closed
6 years ago
0