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Hi!
I'm trying to load the data in the db, but get the following error:
```
CMD: TrinotateSeqLoader.pl --sqlite Trinotate.sqlite --gene_trans_map Trinity.fasta.gene_trans_map --transcript_fasta Tri…
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Hello Prof，
Thank you very much for developing this script, which provides us more possibilities for subsequent analysis.
Here are some questions that I am confused about.
1. The enhanced sequenc…
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Hi,
Can I provide to funannotate predict several bam files?
I have a another question about portcullis and PASA. Since I have run mikado already with portcullis and transdecoder and I got the…
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Hi,
I am trying to annotate fungal genome assemblies where there is no transcriptomic data available for the exact species. My understanding is that RNAseq from a related species (~same genus or ev…
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Dear All,
I realized that though in TransDecoder.LongOrfs we can choose the specific genetic code and than we have the proteins producing properly, so TransDecoder.Predict does not take the specific …
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Transdecoder is designed to detect cds in transcripts but could it also be used to detect cds in a draft genome? Running transdecoder on a fasta containing genome scaffolds would yield the exonic sequ…
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I've used transdecoder in three different publication that we'll send to publish... How should I cite TransDecoder? Using the same paper that I've for Trinotate (axolotl regeneration paper)
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Hi all,
I have successfully annotated my transcriptome of interest, and all of the individual data files look great and populated. However, when generating the sqlite database, the PFAM column is l…
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Hello sir,
I am using transdecodeer for my RNA analysis, however, I keep on getting this error and cannot seem to get it fixed:
command: get_longest_ORF_per_transcript.pl Trinity_cdhit.fasta.t…
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Hi
I test the examples data in /sample_data/cufflinks_example with the script /sample_data/cufflinks_example/runMe.sh, all things is OK. but I used the same script runMe.sh with my own data, there we…