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We had a [Prod issue](https://github.com/SACGF/variantgrid_shariant/issues/158) where search was broken due to VEP version conflicts etc
We should only die if DEBUG is True, for prod systems, better …
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### Description of the bug
I get the below warning:
`WARN: A process with name 'GATK4_HAPLOTYPECALLERGVCF' is defined more than once in module script: /home/omeran/.nextflow/assets/nf-core/rnava…
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NotationConverter.normalizeGenomicLocation(GenomicLocation genomicLocation) will strip a common nucleotide prefix from a Genomic Location, removing invariant nucleotides at the start of the variant fr…
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allow user to select content type to return vep annotations in
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Hello,
I keep have this issue for a while but don't know where is wrong,
Use of uninitialized value in split at /.vep/Plugins/LoF.pm line 531, line 265001.
Use of uninitialized value $number_of…
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The section explains how to create or update vocabularies.
There is a special case for list of terms that are already in a data model transitioning to a stand-alone vocabulary (like the `product-t…
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`slivar_static make-gnotate *.bgz`
Seems to only have processed chr10?
```
> slivar version: 0.1.11 5d6a5990fc06b52cbb1930806d03f786cf27d267
@["make-gnotate", "gnomad.genomes.v3.1.sites.chr10.…
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There are... quite a few endpoints...
- GET archive/id/:id
- [ ] Function
- [ ] Docs
- POST archive/id
- [ ] Function
- [ ] Docs
- GET genetree/id/:id
- [ ] Function
- [ ] Docs
- GET ge…
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### 在提问之前...
- [X] 我已经搜索了现有的 issues
- [X] 我在提问题之前至少花费了 5 分钟来思考和准备
- [X] 我正在使用最新版的 SRC
### 描述你的问题
模拟宇宙不选择智识金祝福
### 如何复现
1. 前往 '...'
2. 点击 '....'
3. 滑动到 '....'
4. 出现问题
### 预期行为
_No response_…
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Whet the annotated VCF has Mastermind URL in CSQ tags, vcf2db.py throw the following error:
Traceback (most recent call last):
File "/opt/vcf2db/vcf2db.py", line 923, in
impacts_extras=a.…