-
When I use the instrain compare -bams parameter, I consistently encounter the following issue:‘’
“ValueError: error during iteration
BlockingIOError: [Errno 11] Resource temporarily unavailable
Exc…
-
```
> sudo python setup.py install
running install
Checking .pth file support in /usr/local/lib/python2.7/dist-packages/
/usr/bin/python -E -c pass
TEST PASSED: /usr/local/lib/python2.7/dist-packages/…
-
Hi,
While `--output-type v --write-index=tbi` gives an error:
```
[E::bcf_idx_init] Indexing is only supported on BGZF-compressed files
```
`--output-type u/b --write-index=tbi` results in…
-
Hey Mike
I downloaded BamM today and tried to install it on CentOS6.6 (with python2.7, python2.7 numpy, samtools and bwa tools):
```
$ git clone https://github.com/minillinim/BamM.git
$ cd BamM
$ p…
-
Good day.
I am trying to install SAMTools 1.3 on Cygwin using my Windows8.1 64bit machine. I successfully ran the "./configure" command as shown below:
$ ./configure
checking for gcc... gcc
checking …
-
How to parallel mpileup as sort or merge?
-
Hi,
are these errors known? First seems to be a missing include path, second is that configure likely did not record path to site-wide htslib installation? I have gcc-4.9.4.
```
>>> Configuring…
-
Hi, crAssphage man,
Any plan to support gzip input ?
https://lh3.github.io/2014/07/05/random-access-to-zlib-compressed-files
Good tool, thanks ~
-
Hi ,
I am trying to run quant3p for the example file inside the tool. But I am getting the following error:
Calling peaks...
Calling peaks
INFO @ Tue, 26 Nov 2019 12:01:15:
# Command line: c…
NitKV updated
4 years ago
-
Novice (non) Python user with limited departmental support. Apologies in advance.
I'm trying to apply this fitDNM (Python version) to a preliminary dataset of WGS-derived DNMs (100,000 genomes pr…