Ecogenomics BamM issues

Ecogenomics / BamM

Metagenomics-focused BAM file manipulation

http://ecogenomics.github.io/BamM/

GNU Lesser General Public License v3.0

16 stars 7 forks source link

issues

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libcfu :: compilation error

#58 EricDeveaud opened 4 years ago
2
bamm filter

#57 liaohu1231 closed 4 years ago
1
Problems installing BamM

#56 lucaspompeun closed 3 years ago
4
'bamm filter' command with tpmean mode can't produce index file (bai file).

#55 heavennew closed 5 years ago
2
Fix build issue

#54 timbalam closed 6 years ago
0
Profile

#53 timbalam closed 6 years ago
0
mysterious error when building with python3 version of Anaconda 5.1.0

#52 skaffen-amtiskaw opened 6 years ago
1
Links summary

#51 caonetto opened 6 years ago
1
Bamm available as conda package

#50 mdehollander closed 6 years ago
2
bamm extract: bamm-specific header prefixes are not compatible with downstream analyses tools

#49 jvollme opened 6 years ago
0
v1.7.3 build specifications

#48 manifestoso opened 6 years ago
0
More information about your docker file

#47 lfaller closed 7 years ago
4
"bamm parse" exits with Error message, even though "bamm make" works fine

#46 jvollme closed 7 years ago
3
tpmean gives somewhat unintuitive results when coverage is low

#45 wwood opened 7 years ago
0
An error when installing BamM

#44 minsookim1983 opened 7 years ago
8
bump patch version number

#43 timbalam closed 7 years ago
0
Keep copy of libBamM.a in bamm folder for testing purposes

#42 timbalam closed 7 years ago
0
Add my email to webpage

#41 timbalam closed 7 years ago
0
Add instructions for installing through Guix.

#40 wwood closed 7 years ago
0
libcfu/lib not included in code

#39 osvatic opened 7 years ago
8
truncate annoying long error

#38 timbalam closed 7 years ago
0
groopm parse fails with "Distance matrix 'X' must be symmetric"

#37 fungs closed 8 years ago
0
BamM build process changes

#36 timbalam closed 7 years ago
2
Fixes segfault in bamm filter

#35 timbalam closed 8 years ago
3
nosetests failed

#34 blancaverag opened 8 years ago
10
update for samtools 1.3

#33 timbalam closed 8 years ago
1
Only mapped reads stored in bam file

#32 mdehollander opened 8 years ago
3
Contam options

#31 timbalam closed 8 years ago
2
Bump version number.

#30 timbalam closed 8 years ago
2
libtool required for install

#29 chuckpr closed 8 years ago
4
Make bamm filter test portable

#28 timbalam closed 8 years ago
1
BamM v1.5.0 - failed nosetests - missing filtered bam files - Also python library bug from 1.5.0 and 1.4.1

#27 AlexRBaker opened 8 years ago
7
Sort cpus

#26 wwood closed 9 years ago
2
BamM Filter

#25 timbalam closed 9 years ago
1
BamM make keeps printing the help message

#24 mdehollander closed 9 years ago
3
No file written when extracting reads from bin

#23 mdehollander closed 9 years ago
3
code cleanup, add variance as a coverage mode

#22 wwood closed 9 years ago
0
Installing on CentOS6.6

#21 linsalrob opened 9 years ago
7
Installing on Ubuntu 14.04

#20 linsalrob closed 9 years ago
5
Automated changes made using modernize

#19 AlexRBaker closed 9 years ago
2
nosetests fails

#18 nr0cinu closed 9 years ago
11
BamM installation

#17 tvishniv closed 9 years ago
26
Testing BamM using nosetests

#16 rdl88 closed 9 years ago
28
Possible string concatenation rather than int additon in bamm make version 1.1.1

#15 Askars closed 9 years ago
1
Removed version and status strings from all files except bamm.

#14 donovan-h-parks closed 9 years ago
0
Updated CLI help and added initial unit tests for CLI.

#13 donovan-h-parks closed 9 years ago
0
Additional unit tests for CLI.

#12 donovan-h-parks closed 9 years ago
0
bamm make -m flag no workee

#11 wwood closed 9 years ago
1
Added initial test case for CLI.

#10 donovan-h-parks closed 9 years ago
0
bamm trimmed mean cannot be specified asymmetrically

#9 wwood closed 9 years ago
1