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When installing Bio::DB::BigFile (as a dependency to PCAP-core) it fails some unit tests. Here is the build.log.
```
cpanm (App::cpanminus) 1.7042 on perl 5.018002 built for x86_64-linux-thread-multi…
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Hello,
I'm having an issue running crossmap on the human genome, specifically it seems like when it gets to the unlocalized or unplaced scaffolds. I have limited the dataset by not using the "alt" …
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Create qsub script that invokes mpurun directly instead of calling cluster resource management. This task is complete when the following version of command will run by pressing button "Run" in the rel…
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Newer versions of fastq-dump apparently attempt to access NCBI resources via some network port (not standard http), even when all of the required resources are local (retrieved with prefetch). This i…
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Sivasish might have fixed this, but it seems the python version problem:
```
$ which python
/usr/local/Anaconda/envs/py3.4.3/bin/python
$ python /data/Clinomics/Tools/QC_stats_Final.py SUBJECT/HD753…
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This flag was used in the past to indicate a GCC compiler older than 4.2. As far as I know, we don't support that compiler, so it should be removed.
We should add a check in the top level cmake for …
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I've compiled and installed bamliquidator, but my initial tests are giving an ominous error:
$ bamliquidator_batch.py bam_links
Liquidating bam_links/D1JF9ACXX_MN23.bam (file 1 of 2)
ERROR Unhandle…
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here is my directory structure:
ml@ml-laptop:~$ ls
anaconda Desktop Downloads log Music output Public uce-2.5k-probes.fasta
anaconda3 Documents examples.desktop log-path …