BradnerLab pipeline issues

BradnerLab / pipeline

bradner lab computation pipeline scripts

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Installation failure of bamliquidator on centos7

#82 Yuxuan0060 opened 2 years ago
0
Restored bokeh plotting functionality with Docker build

#81 jdimatteo opened 3 years ago
0
Installation failure in MacOS

#80 xiaoyonf opened 3 years ago
0
bamliquidator_batch ValueError: cannot set WRITEABLE flag to True of this array

#79 raphaelbetschart closed 4 years ago
1
Adding docs from wiki to docs folder

#78 vsoch closed 4 years ago
0
Quickly fix travis errors which seems to have been broken for years

#77 jdimatteo closed 4 years ago
1
Adding instructions for build and usage of containers

#76 vsoch closed 4 years ago
7
conversion from python2 to python3

#75 madetunj closed 4 years ago
0
Add Python3 support

#74 jdimatteo closed 4 years ago
0
travis tests failing

#73 jdimatteo opened 4 years ago
1
created a very simple test script for basic sanity after installation

#72 GodloveD closed 4 years ago
2
real examples with data and output

#71 GodloveD closed 4 years ago
6
Correct binsize calculation

#70 Drmirdeep opened 5 years ago
6
Wrong binsize calculation accumulates offset errors with increasing bin numbers

#69 Drmirdeep opened 5 years ago
0
Pypi packages are dropping python2 support

#68 jvrakor opened 5 years ago
0
supported to run ROSE2 in python3 environment

#67 gauravj49 opened 5 years ago
2
support bionic for ppa

#66 jdimatteo closed 5 years ago
0
networkScatter.R not found

#65 ssmadha closed 5 years ago
2
MAC installation problem

#64 biogeeky opened 6 years ago
0
Docker

#63 jdimatteo closed 4 years ago
5
Operation Timed out on ROSE2

#62 GryderArt opened 6 years ago
13
bamliquidator_regions error

#61 itsvenu opened 6 years ago
1
Questions about installation and output

#60 lachlansimpson closed 7 years ago
1
Installation issue: -lbam is error, but hdf5/serial isn't a thing at all?

#59 lachlansimpson closed 7 years ago
8
Error in bamToGFF.py

#58 gunjangala closed 7 years ago
6
bamliquidator: Installation issues

#57 itsvenu closed 7 years ago
6
procedure to add a reference genome

#56 mpallocc closed 7 years ago
4
Centos 6.8 build

#55 jdimatteo closed 7 years ago
0
Motif liquidator matrix

#54 jdimatteo closed 8 years ago
0
installation on MAC

#53 nbahlis closed 7 years ago
9
enable Jenkins motif liquidator tests on master branch when merged with master

#52 jdimatteo opened 9 years ago
1
bamliquidator_batch now compatible with latest bokeh version

#51 jdimatteo closed 9 years ago
3
global name 'maketrans' is not defined

#50 fburdet closed 9 years ago
3
Unhandled exception: pthread_attr_setstacksize: Invalid argument

#49 davidhoover closed 9 years ago
7
Reverted order of int casting to prevent divide by zero errors

#48 dpolaski closed 9 years ago
0
Merged Fed's crc utils version with the current version

#47 dpolaski closed 9 years ago
0
bamliquidator crashes after failed absurdly large memory allocation

#46 jdimatteo closed 9 years ago
3
consider using git submodules and allowing local builds of bamliquidator?

#45 semenko closed 9 years ago
5
version 1.2 minor bug fixes and enhancements

#44 jdimatteo closed 9 years ago
0
bamliquidator_batch (calling bamliquidator_regions) fails on valid .bed file

#43 semenko closed 9 years ago
4
provide option for a different normalization method

#42 jdimatteo opened 10 years ago
2
tod /crusader backup filesystem full

#41 jdimatteo closed 9 years ago
7
bamliquidator_batch -m option for multiple files should add columns

#40 jdimatteo closed 9 years ago
0
Update Install Instructions when bamliquidator 1.2 released

#39 jdimatteo closed 9 years ago
1
clean up bamliquidator build and dput warnings

#38 jdimatteo opened 10 years ago
0
consider adding an option to control the number of threads used by bamliquidator_batch

#37 jdimatteo closed 9 years ago
0
testing notifications

#36 bar2222 closed 10 years ago
0
enhance reporting of parsing errors

#35 jdimatteo opened 10 years ago
0
Exclude bad regions

#34 jdimatteo closed 10 years ago
2
bamliquidator rounding error

#33 jdimatteo closed 9 years ago
3