BradnerLab pipeline issues

BradnerLab / pipeline

bradner lab computation pipeline scripts

Other

52 stars 47 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Installation failure of bamliquidator on centos7

#82 Yuxuan0060 opened 1 year ago
0
Restored bokeh plotting functionality with Docker build

#81 jdimatteo opened 2 years ago
0
Installation failure in MacOS

#80 xiaoyonf opened 3 years ago
0
bamliquidator_batch ValueError: cannot set WRITEABLE flag to True of this array

#79 raphaelbetschart closed 3 years ago
1
Adding docs from wiki to docs folder

#78 vsoch closed 4 years ago
0
Quickly fix travis errors which seems to have been broken for years

#77 jdimatteo closed 4 years ago
1
Adding instructions for build and usage of containers

#76 vsoch closed 4 years ago
7
conversion from python2 to python3

#75 madetunj closed 4 years ago
0
Add Python3 support

#74 jdimatteo closed 4 years ago
0
travis tests failing

#73 jdimatteo opened 4 years ago
1
created a very simple test script for basic sanity after installation

#72 GodloveD closed 4 years ago
2
real examples with data and output

#71 GodloveD closed 4 years ago
6
Correct binsize calculation

#70 Drmirdeep opened 4 years ago
6
Wrong binsize calculation accumulates offset errors with increasing bin numbers

#69 Drmirdeep opened 4 years ago
0
Pypi packages are dropping python2 support

#68 jvrakor opened 4 years ago
0
supported to run ROSE2 in python3 environment

#67 gauravj49 opened 5 years ago
2
support bionic for ppa

#66 jdimatteo closed 5 years ago
0
networkScatter.R not found

#65 ssmadha closed 5 years ago
2
MAC installation problem

#64 biogeeky opened 5 years ago
0
Docker

#63 jdimatteo closed 4 years ago
5
Operation Timed out on ROSE2

#62 GryderArt opened 6 years ago
13
bamliquidator_regions error

#61 itsvenu opened 6 years ago
1
Questions about installation and output

#60 lachlansimpson closed 6 years ago
1
Installation issue: -lbam is error, but hdf5/serial isn't a thing at all?

#59 lachlansimpson closed 6 years ago
8
Error in bamToGFF.py

#58 gunjangala closed 7 years ago
6
bamliquidator: Installation issues

#57 itsvenu closed 6 years ago
6
procedure to add a reference genome

#56 mpallocc closed 6 years ago
4
Centos 6.8 build

#55 jdimatteo closed 7 years ago
0
Motif liquidator matrix

#54 jdimatteo closed 8 years ago
0
installation on MAC

#53 nbahlis closed 6 years ago
9
enable Jenkins motif liquidator tests on master branch when merged with master

#52 jdimatteo opened 8 years ago
1
bamliquidator_batch now compatible with latest bokeh version

#51 jdimatteo closed 8 years ago
3
global name 'maketrans' is not defined

#50 fburdet closed 9 years ago
3
Unhandled exception: pthread_attr_setstacksize: Invalid argument

#49 davidhoover closed 8 years ago
7
Reverted order of int casting to prevent divide by zero errors

#48 dpolaski closed 9 years ago
0
Merged Fed's crc utils version with the current version

#47 dpolaski closed 9 years ago
0
bamliquidator crashes after failed absurdly large memory allocation

#46 jdimatteo closed 9 years ago
3
consider using git submodules and allowing local builds of bamliquidator?

#45 semenko closed 9 years ago
5
version 1.2 minor bug fixes and enhancements

#44 jdimatteo closed 9 years ago
0
bamliquidator_batch (calling bamliquidator_regions) fails on valid .bed file

#43 semenko closed 9 years ago
4
provide option for a different normalization method

#42 jdimatteo opened 9 years ago
2
tod /crusader backup filesystem full

#41 jdimatteo closed 9 years ago
7
bamliquidator_batch -m option for multiple files should add columns

#40 jdimatteo closed 9 years ago
0
Update Install Instructions when bamliquidator 1.2 released

#39 jdimatteo closed 9 years ago
1
clean up bamliquidator build and dput warnings

#38 jdimatteo opened 9 years ago
0
consider adding an option to control the number of threads used by bamliquidator_batch

#37 jdimatteo closed 9 years ago
0
testing notifications

#36 bar2222 closed 10 years ago
0
enhance reporting of parsing errors

#35 jdimatteo opened 10 years ago
0
Exclude bad regions

#34 jdimatteo closed 10 years ago
2
bamliquidator rounding error

#33 jdimatteo closed 9 years ago
3