-
I tried several times running my already split paired-end reads with CRISPResso, unfortunately this is the result I get every time.
[Command used]:
CRISPResso /Users/mtoetzl/anaconda/bin/CRISPR…
-
This is marked as a **good first bug** because, although it sounds complicated, it's computationally not as bad as it sounds - I think. There might be some tricky sections, but if a newcomer is attemp…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/WubingZhang/MAGeCKFlute
Confirm the following by …
-
"CRISPR repeats range in size from 24 to 48 base pairs.[56]" (https://en.wikipedia.org/wiki/CRISPR).
"Analysis of the current CRISPR database24 reveals that repeats range from 23- to 50-nt long and h…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/valenlab/amplican
Confirm the following by editing each…
-
We want to include the sequences of CRISPR repeats and spacers in our database. Repeat sequences can be useful for comparing CRISPR systems between different species, since species with similar repeat…
-
The vignette recommends the usage of Bowtie 2 to map gRNAs to the library sequences. However, there are a number of issues on Bowtie 2's [tracker](https://github.com/BenLangmead/bowtie2/issues) highli…
-
-
I'm running CRISPRessoPooled in mixed-mode with the following command:
```
CRISPRessoPooled \
--fastq_r1 A5_S184_L001_R1_001.fastq.gz \
--fastq_r2 A5_S184_L001_R2_001.fastq.gz \
--amplico…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/OscarBrock/gCrisprTools
Confirm the following by editin…