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Looking at the Viral Zone description of this term, https://viralzone.expasy.org/3965, this term describes a interaction between 3 organisms. We'd like to clarify the definition.
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Obsoletion in enzyme.dat has the form
```
//
ID 1.1.1.139
DE Transferred entry: 1.1.1.21.
```
or
```
//
ID 3.4.13.16
DE Deleted entry.
```
Travis should grep the OBO file for usage…
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I am trying to figure the differenece between these:
GO:0052928 CTP:3'-cytidine-tRNA cytidylyltransferase activity
Catalysis of the reaction: a tRNA with a 3' cytidine + CTP = a tRNA with a 3' CC e…
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**Describe the bug**
Using show_edges=True as an argument raises an error because of the formatting of the colo(u)rs for the scatter plot.
**To Reproduce**
For example:
```
from graphein.prote…
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id: GO:0004325
name: ferrochelatase activity
namespace: molecular_function
def: "Catalysis of the reaction: heme B (protoheme) + H+ = Fe(2+) + protoporphyrin IX." [RHEA:22584]
xref: EC:4.99.1.1
x…
sjm41 updated
2 years ago
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Please remove the obsolete EC:1.11.1.15 (or replace it with EC:1.11.1.24) in the attribution of the def on this term:
id: GO:0051920
name: peroxiredoxin activity
def: "Catalysis of the reaction: …
sjm41 updated
2 years ago
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Terms with labels 'ATP-dependent x':
- [x] ATP-dependent NAD(P)H-hydrate dehydratase activity'
- [x] 'ATP-dependent farnesol kinase activity' -> need to merge into 'GO:0052668 farnesol kinase…
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According to their EC xrefs, the three GO terms below should have their is_a parent changed to:
**id: GO:0046857
name: oxidoreductase activity, acting on other nitrogenous compounds as donors, with …
sjm41 updated
2 years ago
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Currently there is:
id: GO:0017111
name: nucleoside-triphosphatase activity
namespace: molecular_function
def: "Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphat…
sjm41 updated
2 years ago
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**Describe the bug**
When using a local pdb file and a ProteinGraphConfig that contains a DSSPConfig, DSSPConfig always tries to download the pdb file, even if it is in the pdb_dir, and throws an err…