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We want to compare the performance of vg call against a surject-based pipeline. We don't want the haplotype-aware mapping paper to really be about the caller, so we want a known good caller we can use…
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I've been investigating why some unfolded graphs created with `vg prune --unfold-paths` don't have paths corresponding to all GBWT threads. It turns out that the missing threads are short fragments co…
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This issue is reported by @IVANDOMENZAIN.
### Description of the issue:
During converting from humanGEM (v 0.1.0) to enzyme-constraint human model, some non-unique gene-protein associations were f…
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This is blocked on https://github.com/vgteam/toil-vg/issues/490
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/159) by Irantzu A (Bitbucket: [iraun](https://bitbucket.org/iraun), ).**
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Hello!
I'm just w…
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- Allow "admin" to specify max disk usage
- Prevent player from logging in, except "admin" (but can be slow!).
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Dear Canu people,
Great tool thank you! I have a question about stopping and starting an assembly I have running. Basically it is highly heterozygous, so I am trying to "smash the haplotypes togeth…
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Hi everyone, if people aren't yet sick of discussing the finer points of GFA implementation, I've got another one! I like the concept of paths in an assembly graph and use them a lot in Bandage, so I'…
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Dear Koren, Walenz and Phillippy,
This is not an issue but rather query on canu bundling phasing ability for the diploid genome. I attended PAG2018 conference and had nice conversation with Koren …