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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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Dear Wei Shen,
I really like your tool and your tutorials. I just have a question regarding long read metagenomic profiling. Is there a specific parameter combination you would recommend to use to ta…
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The current `Dataset` has type and subtype which is slightly problematic. `Type` is really indicating the row format used in the DwC-A and causes problems since a checklist can have occurrences, and a…
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Hi, I noticed that in function StatKOAttributes, using the adjusted p-value from Wilcoxon rank-sum test or t-test to calculated Z-score of every KO. I wonder what if I used p-value generated from othe…
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Hi,
MAGpy seems to be the perfect tool for my metagenomic data analysis but I am unable to even install it. The manual says that after installing conda I should do the following:
`conda env creat…
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### Expected behavior
### Actual behavior
### Steps to reproduce the behavior
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Hi,
Thank you for an excellent approach to functional metagenomics. I have a major concern with the normalization method based on relative abundance. It has been demonstrated that is one of the wor…
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The log:
```
This is phyloFlash v3.4.2
[20:33:07] Using dbhome
'/workspaces/genome_assembly/tmp/work/25/0e1e09f4cc53ded5f987a83f5db393/PHYLOFLASH_DB'
[20:33:07] working on library …
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Dear Developer,
Firstly, thank you for this fantastic R package. I am working with low microbial biomass samples from the nasopharynx. We are using whole metagenomic sequencing data to characterize…