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HRGV
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phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
GNU General Public License v3.0
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No SSU rRNA sequences found in trusted contigs by Barrnap
#192
AbigailJTH
opened
1 week ago
5
vsearch error
#191
roo-weed
opened
4 months ago
0
Conda/mamba install failed for bedtools doesn't found
#190
luigallucci
opened
5 months ago
0
Conda install doesn't work
#189
YuXiongwu
opened
7 months ago
0
Link version of pre-formatted SILVA database with main taxonomic ranks only
#188
kbseah
closed
8 months ago
1
How to run phyloFlash with Multi-Samples in For Loops
#187
Rainjie-afk
opened
11 months ago
0
Generating heatmap with custom clustering
#186
ArnoHagenbeek
opened
11 months ago
0
solving environment took forever
#185
jianshu93
opened
11 months ago
1
Incomplete taxonomic paths in .phyloFlash.NTUfull_abundance.csv output
#184
chassenr
opened
1 year ago
3
Conda install phyloFlash stalls while solving environment
#183
jwilliams648
opened
1 year ago
2
Inappropriate ioctl for device
#182
nick-youngblut
opened
1 year ago
2
Update documentation for installation and database setup
#181
kbseah
closed
1 year ago
0
phyloFlash.pl: -nozip not functioning
#180
nick-youngblut
opened
1 year ago
3
Conda issue
#179
Unaimend
closed
1 year ago
3
nhmmer failure: Error was 'Inappropriate ioctl for device' and return code '35584'
#178
osvatic
opened
1 year ago
2
SSU RefNR: Failed to establish connection.
#177
nick-youngblut
opened
1 year ago
6
New URL for ENA portal API
#176
kbseah
opened
1 year ago
0
Dev
#175
HRGV
closed
1 year ago
0
Remove incorrect regex for paired-read name suffix
#174
kbseah
closed
1 year ago
0
Incorrect counting of read pairs
#173
kbseah
closed
1 year ago
1
Run Phyloflash with custom database?
#172
whitnersyrena
opened
1 year ago
1
Assembly of partial rRNA sequences
#171
justinmaire
opened
1 year ago
0
Run PhyloFlash with multiple datasets?
#170
whitnersyrena
opened
1 year ago
0
Error was 'No such file or directory' and return code '256'
#169
MAXINELSX
opened
1 year ago
2
'LIBNAME.phyloFlash.NTUabundance.csv'-file not generated
#168
Mathildebd
opened
1 year ago
0
Removing <NONE> tag
#167
aassie
closed
1 year ago
0
Phyloflash refernce database aborts during bowtie build
#166
whitnersyrena
opened
2 years ago
0
Alignment identity?
#165
jzrapp
opened
2 years ago
1
phyloFlash_makedb.pl aborts during clustering: return code 152
#164
annettemcgrath
opened
2 years ago
5
SSU from single genomes
#163
timyerg
opened
2 years ago
0
E-value of -1
#162
em9
opened
2 years ago
1
Error while generating heatmap
#161
Sidduppal
opened
2 years ago
0
PhyloFlash aborting while running Emirge
#160
Sidduppal
opened
2 years ago
3
required fastafrombed to install phyloFlash
#159
SumTot
opened
2 years ago
1
killed while loading SAM into Memory
#158
Leo-Sprengel
opened
2 years ago
2
Issue comparing databases and locating reads used when -readlimit applied
#157
mmcardozo
opened
2 years ago
1
Phyloflash throws error '6400' while running phyloFlash_plotscript_svg.pl
#156
meet3012
opened
2 years ago
2
Output files
#155
shunan29
closed
2 years ago
9
problems in installing phyloflash and sortmerna
#154
GeonhoCho
closed
2 years ago
4
new problem installing phyloflash
#153
pacificasommers
closed
2 years ago
2
phyloFlash_makedb.pl gets stuck with PR2 data base
#152
mmcardozo
closed
2 years ago
5
bbmap -id
#151
ghost
closed
2 years ago
3
SPAdes memory limit
#150
aleixop
closed
2 years ago
2
Bump addressable from 2.7.0 to 2.8.0 in /docs
#149
dependabot[bot]
closed
2 years ago
0
raw data or clean data
#148
fujch7
closed
2 years ago
3
How to plot only 18S?
#147
JSSaini
closed
3 years ago
1
Index creation problem with PhyloFlash – Clustering Step _ FATAL: Tool execution failed! Error was 'No such file or directory' and return code '9'.
#146
MeganeNoyer
closed
3 years ago
6
--phred-offset not recognized
#145
jianshu93
opened
3 years ago
0
phyloFlash failed at spades step
#144
songweizhi
closed
3 years ago
4
New minor version pf3.4.1
#143
kbseah
closed
2 years ago
0
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