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HRGV
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phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
GNU General Public License v3.0
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error when running phyloflash with barrnap (FATAL: Tool execution failed!.)
#142
dluecking
closed
2 years ago
14
FASTA of unassembled hits
#141
eolesin
closed
3 years ago
2
Problem with database when running with -sortmerna
#140
haitaowang1
closed
2 years ago
1
PhyloFlash fails while creating database
#139
psampara
closed
2 years ago
7
phyloFlash_compare.pl --barplot_scaleplotwidth not scaling
#138
ghost
closed
2 years ago
1
Silva_v138.1: Error with classification of SSU
#137
isidoramorel
closed
2 years ago
2
phyloflash killed after "Reading SAM file Sample1.bbmap.sam into memory"
#136
jzrapp
closed
3 years ago
2
Fraction of reads assembled was 0 after using sortmeRNA
#135
kjvilardi
closed
2 years ago
2
Setting -clusterid to 99 but clustering is still performed at default 97%
#134
kjvilardi
closed
2 years ago
2
`-dbhome` option for phyloFlash_makedb.pl
#133
rpetit3
opened
3 years ago
11
Update conda installation command in docs
#132
kbseah
closed
3 years ago
0
Error while comparing samples with phyloFlash_compare.pl
#131
mars188
closed
2 years ago
2
Error while installing reference database
#130
mars188
closed
2 years ago
6
problem in installing phyloflash
#129
mars188
closed
2 years ago
6
PhyloFlash.pm hashing error during taxonomic redistribution: Can't use string as a HASH ref while "strict refs" in use
#128
FranckLejzerowicz
opened
3 years ago
11
Silva taxonomic rank assignment
#127
chassenr
closed
2 years ago
14
-lib may contain only alphanumeric characters
#126
susheelbhanu
closed
2 years ago
4
FATAL: Tool execution failed!.Error was '' and return code '512' Aborting.
#125
Vikicai
closed
4 years ago
6
Taxonomy for eukaryotic sequences
#124
pm-leung
opened
4 years ago
3
Extraction of the SSU rRNA sequences that did not assemble into full length sequences
#123
aquagenomics
closed
3 years ago
2
Error in install.packages(missing.packages)
#122
wangyy99
closed
2 years ago
3
Detect zero insert size and skip
#121
kbseah
opened
4 years ago
0
While running "phyloFlash_makedb.pl --remote" FATAL ERROR error code 256
#120
Jessica-2345
closed
4 years ago
11
Auto detect read length and change database min length
#119
kbseah
closed
3 years ago
1
Use PacBio or Nanopore long reads for assembly step
#118
kbseah
opened
4 years ago
0
Change `minlength` parameter with custom database
#117
kbseah
opened
4 years ago
0
Phyloflash error '6400'
#116
diecasfranco
closed
3 years ago
1
Not recognize my own database
#115
SumTot
closed
4 years ago
11
Github installation, checking for dependencies - error output
#114
jade-davies
closed
4 years ago
4
Error was 'No such file or directory' and return code '9' while running "phyloFlash_makedb.pl --remote"
#113
mutantjoo0
closed
2 years ago
3
Taxonomic rank
#112
AmaliT
closed
2 years ago
20
Error in phyloFlash_fastgFishing: Use of uninitialized value
#111
sarah872
closed
4 years ago
2
phyloFlash aborts at spades subcommand - error code 256
#110
zehanna
closed
2 years ago
6
Document usage of ntu_table task in phyloFlash_compare.pl script
#109
kbseah
closed
4 years ago
0
Fix bug double counting of mapped read segments
#108
kbseah
closed
4 years ago
0
Help with error 512
#107
mradz19
closed
2 years ago
5
phyloFlash_makedb.pl failed # error code 256
#106
DennisJakob
closed
4 years ago
2
Conda install doesn't work
#105
aassie
closed
4 years ago
15
Fail during bowtiebuild in makedb.pl
#104
morgvevans
closed
4 years ago
5
Fix bug in using SE reads
#103
kbseah
closed
4 years ago
0
Improved single end support
#102
rpetit3
closed
4 years ago
0
Change wildcard for download path of SILVA database
#101
kbseah
closed
4 years ago
1
Name change in SILVA 138 breaks phyloFlash_makedb.pl -remote
#100
rpetit3
closed
4 years ago
2
Phyloflash aborts after creating .bbmap.out file
#99
psampara
closed
4 years ago
16
can't create database using phyloFlash_makedb.pl
#98
sashulkaSh
closed
4 years ago
6
Fasta input causes spades assembly failure
#97
CormacKinsella
closed
4 years ago
2
Bump jekyll from 3.5.1 to 3.6.3 in /docs
#96
dependabot[bot]
closed
4 years ago
0
makedb.pl failed # error code 256
#95
Oakley-Lab
closed
5 years ago
17
phyloFlash.pl -check_env error
#94
YiweiNiu
closed
5 years ago
2
Check phyloFlash_compare.pl dependencies at start
#93
HRGV
opened
5 years ago
0
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