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Hi Jinghao,
Recently I tried to run MIN1PIPE on one of my calcium imaging videos but get the following error code: (just copied everything I got from matlab here)
Overwrite raw .mat file (data)? (…
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MacOS (Yosemite), Python 3.6, Jupyter Notebook.
**I'm having difficulties getting through the pre-processing phase with avi files. If I convert to hdf5 or tiff, I have no problem getting through th…
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Hi there,
I've been trying to run .avi files from UCLA miniscope recordings through run_pipline.m, and have been encountering this error:
Undefined function or variable 'sizY'.
Error in normc…
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## Reproduction:
try to point to someone or something and watch it shoot the RPG (shift middlemousebutton)
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Hi,
I'm trying to use suite2p Python version for processing of 'demo_data.tif' file from this page:
https://github.com/JinghaoLu/MIN1PIPE/tree/master/demo
but getting result that make no sense w…
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Hi, I use the macOS, Python 3.6, and Jupyter Notebook.
I'm planning on using the UCLA miniscope, so I'll get my recordings in .avi format.
My current status is that I installed Anaconda and git clon…
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- Windows 10, Python 3, Jupyter Notebook
- I am trying to run this pipeline with Miniscope data. Miniscope saves videos in the .avi format, and I receive the following error in the Motion Corr…
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The line is:
`using (var capture = Capture.CreateCameraCapture(Index))`
The error is:
```
An exception of type 'System.TypeInitializationException' occurred in OpenCV.Net.dll but was not handle…
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Hi,
I'm trying to fit cnmfe to my own data. Its a video with 2357 frames, with dims=[486, 648].
A ValueError is thrown when initializing the fitting procedure:
-------------------------------…
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Hello,
_I am having trouble running the following line from the main_cnmf_e example notebook -_
data, video_info = normcorre(files, None, parameters['motion_correction'])
_I am trying to pr…