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Hello,
I am excited to try out this module. I love the method and the work that the lab has done. I recently downloaded the slicer extension and am having an error on step2 of the rigid registrati…
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**Describe the problem**
Hi, could anyone tell me why when I use antsRegistrationSyn - RIGID TRANSFORMATION, output resolution of moving images changed? Rigid means preservation of size, right? Im …
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**Describe the problem**
I'm using the ANTs `antsRegistration` CMD-line executable, with SyN as transform and CC as metric. I'm using the `--random-seed` option to set the value, but no matter …
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Hi,
So I noticed that VALIS is not aligning these H&E and IF images that are mirrored/flipped.
Below are the processed images (which look good to me), and the rigid overlap that was calculated. …
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Hello,
I am using the ants.apply_transforms() to apply a transformation to some additional images after registration of 2 MRI volumes. Specifically in the code:
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Hello,
The file size of the registration image using VALIS is almost 10 times larger than the original WSI. I checked the source code of VALIS, but could not find the cause.
e.g.
Original (ndp…
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I have a collection of good initial (affine) transforms stored in .tfm files. In SimpleITK I can load those using `tx = sitk.ReadTransform(tfm_file)`. I would like to use ElastiX to refine the alignme…
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My lab would love to use your program instead of FreeSurfer to speed up our pre-processing pipeline tenfold. However, we use fmriprep for our pre-processing and currently FastSurfer is not compatible …
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Thank you for your work. It inspired me a lot.
But I don't quite understand the significance of low-overlap non-rigid point cloud registration when the source point cloud does not fully contain the…
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Hello,
I have recently learned about valis for image registration and I tried to use it on 2 images with different stains to register the AT8 image to the reference H&E image. However when It comp…