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Hello!
I'm running into an error at the "Result dataframe has been constructed..." stage.
Here is he command I used:
`python ~/src/OptiType/OptiTypePipeline.py -v -i nebula_finished.fastq --dna -o .…
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Should we also integrate wrapper function to prominent HLA typing methods?
Which one should those be besides OptiType?:
- seq2HLA
- Athlates
- HLAminer
- HLAforrest
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Hi,
I am trying to validate if bcbio is set right in our HPC. For this, we need a small data that can be optimised easily. That is why I would like to reproduce chr 6 data. When I run the process, th…
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Hello,
I received the above error running on example data. Do you have any advice about how I can proceed? Thanks!
Command:
python OptiTypePipeline.py -i test/exome/NA11995_SRR766010_1_fished.fastq …
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Results after #1104 was fixed.
```
dwaggott@scg3-ln02: ~/ashley2/apps
$ rm -rf tmpbcbio-install
dwaggott@scg3-ln02: ~/ashley2/apps
$ bcbio_nextgen.py upgrade -u development --genomes hg38
Traceback …
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Hi,
I tried the install bcbio with the command below.
```
python bcbio_nextgen_install.py /usr/local/share/bcbio --tooldir=/usr/local --genomes GRCh37
```
My bcbio installation stuck at the step …
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Hello,
I received the following error. I am not familiar with python so am unable to investigate further. I have run OptiType successfully on many other similar files and encountered this error only …
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Hello,
Optitype keeps giving me the same error for a group of samples. This is single end, 100bp data. Normally the software works great for me so I don't think it's my version/setup. I can send yo…
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Hello,
I am trying to install Bc-Bio on a linux cluster, but keep running into this issue:
```
The following packages will be UPDATED:
singledispatch: 3.4.0.3-py27_0 --> 3.4.0.3-…
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Hi,
I've been running OptiType mostly successfully; however, sometimes there is a KeyError that is raised, which causes the program to stop. It only affects some samples but I haven't found a common…