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Hi Thang,
I ran iq package and diann package to deal with a DIANN result (report.tsv).
- For iq package, I followed the pipeline described here [https://cran.r-project.org/web/packages/iq/vignet…
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Reported as a taxon constraint prediction inconsistency https://github.com/geneontology/go-ontology/issues/16298#issuecomment-921962141
GO:0030312
We propose to move GO:0062039 biofilm matrix up t…
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This doesn't seem quite right
The KDEL receptor, when mutated activates the UPR (likely due to loss of resident ER proteins)
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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I tested these two links, and they worked as expected.
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&id=6060535&retmote=rsr
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esear…
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**Note that there are multiple terms to review, so multiple spreadsheets**
**GO:0030817 regulation of cAMP biosynthetic process**
DONE https://docs.google.com/spreadsheets/d/16bL-BHUIoljKbcuCwDdG…
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#### Current behavior:
20 genes are discovered to be uncorrelated with their corresponding reactions in `Fructose and mannose metabolism`/`Galactose metabolism`.
| Gene| UniProtID | Reacti…
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Hello,
I am using a reference genome of Folsomia candida available via NCBI's datasets for RNA-Seq expression studies. A part of the gene/transcript annotation contains multiple mRNA / CDS annotatio…
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This is to discuss the work that will need to be done to update 'has input', 'has output', and 'transports or maintains localization of' in GO-CAM models to 'has primary input' and 'has primary output…
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Seems like "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity" (GO:0033842) should be a child of "beta-1,4-N-acetylgalactosaminyltransferase activity" (GO:00332…
sjm41 updated
2 weeks ago