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- how to put into ingest pipeline?
- we need to store a report
- we need to respond to the results appropriately
Tagging @gap736uk
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Discussed in the Imaging meeting of March 16, 2018:
`notification_spool` table is used by:
1) The imaging browser when QC in the front-end is happening (all of these have process_id=0); Dave said …
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## **Describe the bug**
I have followed the instructions for installation of the pipeline using conda, the installation was successfully completed but when I run it I get the following error:
Sta…
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Add another hybrid strategy for samples where this might be the best option.
This strategy is to perform a short reads assembly and then scaffold with long reads.
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As the title indicates, I recently used isONform full pipeline on data generated using ONT PCR cDNA [SQK-PCS109) kit. Using the output "transcriptome.fastq" with BUSCO gives me the error message "ERRO…
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Presumably on this line:
https://github.com/genome/qc-analysis-pipeline/blob/cb05da7f19972db6189b37a1ef9de6561fc0e83a/tasks/Qc.wdl#L302
I'm seeing thousands of warning messages like:
```
tar: Ig…
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Hi,
I am wondering whether the Ensembl CNV can conduct some QC for the three callers. Since in my results, I found some weird CNVs in the cnvr_batch.txt,
22 q 42525772 42525772 …
Jia21 updated
4 years ago
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### What version of the bids app were you using?
bids/brainsuite:v23a
### Describe your problem in detail.
I was trying run BrainSuite for resting-state analysis, and it failed to run.
My datase…
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### Description of the bug
Hello again!
After solving previous problems https://github.com/DIncalciLab/samurai/issues/19 I rerun the pipeline but after a while I'm getting a new error related w…
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We need to figure out the plan how we scientifically validate the data we produce.
@xyg123 could you please add the summary we discussed yesterday?