fmalmeida MpGAP issues - Githubissues

fmalmeida / MpGAP

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

https://mpgap.readthedocs.io/en/latest/

GNU General Public License v3.0

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NOTE: Process `HYBRID:strategy_2_pilon (aspergillus_terreus:strategy_2)` terminated with an error exit status (137) -- Execution is retried (1)

#77 sajjadasaf opened 1 month ago
8
ERROR ~ Error executing process > 'HYBRID:strategy_2_wtdbg2 (ecoli_30X:strategy_2)'

#76 sajjadasaf closed 1 month ago
3
error in running MpGAP with SRR8482585_30X_{1,2}.fastq.gz and SRX5299443_30X.fastq.gz

#75 CaiBiotech closed 2 months ago
4
Enhance polishing and downstream as hybracter

#74 fmalmeida opened 3 months ago
0
Wrap-up version 3.2.0

#73 fmalmeida closed 4 months ago
0
should hifiasm be executed only when user says reads are high quality?

#72 fmalmeida closed 4 months ago
1
allow hifiasm to use hi-c and parental data

#71 fmalmeida opened 4 months ago
0
Add hifiasm assembler

#70 scintilla9 closed 4 months ago
8
66 add automatic samplesheet for bacannot

#69 fmalmeida closed 4 months ago
1
When not giving `--genome_size` for long reads, message goes to log and not console

#68 fmalmeida closed 4 months ago
1
add the possibility of running directly from SRA IDs

#67 fmalmeida opened 4 months ago
0
add automatic samplesheet for bacannot

#66 fmalmeida closed 4 months ago
0
50 add skip parameter for sreads polishers and fix multiqc report names

#65 fmalmeida closed 4 months ago
1
61 add a simple parameter to handle starting memory settings

#64 fmalmeida closed 4 months ago
0
Fixes issue #52

#63 fmalmeida closed 4 months ago
0
58 add example of non bacterial dataset analysis paper review

#62 fmalmeida closed 4 months ago
3
Add a simple parameter to handle starting memory settings

#61 fmalmeida closed 4 months ago
1
update paper information

#60 fmalmeida closed 6 months ago
0
problem with longreads_only assembly

#59 Guy2Horev closed 4 months ago
4
Add example of non-bacterial dataset analysis (paper review)

#58 fmalmeida closed 4 months ago
1
Enhance documentation (paper review)

#57 fmalmeida closed 4 months ago
2
Saving code that was wrongly merged to master instead of dev

#56 fmalmeida closed 6 months ago
0
Revert Master

#55 fmalmeida closed 7 months ago
0
100% missing in Busco

#54 scintilla9 closed 7 months ago
4
Add hifiasm for long reads assemble

#53 scintilla9 closed 4 months ago
5
Incomplete pipeline and different errors when using nanopore reads files with different sizes (900 mb vs 11Gb)

#52 SergioChile81 closed 4 months ago
18
include citation information

#51 fmalmeida closed 9 months ago
0
Add skip parameter for sreads polishers and fix multiqc report names

#50 fmalmeida closed 4 months ago
1
22 add polypolish tool

#49 fmalmeida closed 1 year ago
1
31 new directory called final output

#48 fmalmeida closed 1 year ago
0
add homopolish tool

#47 fmalmeida closed 1 year ago
1
Update github actions for testing profiles

#46 fmalmeida closed 1 year ago
0
30 change to unicycler v050

#45 fmalmeida closed 1 year ago
1
add illumina docker test

#44 fmalmeida closed 1 year ago
0
update tool versions

#43 fmalmeida opened 1 year ago
0
Requesting support with error "Explicit 'name separator' in class"

#42 josruirod closed 1 year ago
4
add 3 hybrid strategy

#41 fmalmeida opened 1 year ago
1
add trycycler

#40 fmalmeida opened 1 year ago
0
mkdir: cannot create directory

#39 josruirod closed 1 year ago
4
quast generating empty files

#38 josruirod closed 1 year ago
24
customizing hybrid_strategy check-up

#37 fmalmeida closed 1 year ago
0
No valid choice in the pipeline parameters for hybrid strategies and problem with -c config

#36 josruirod closed 1 year ago
9
adding Megahit separate module

#35 fmalmeida closed 2 years ago
0
Merge dev branch into master

#34 fmalmeida closed 2 years ago
0
use nf-core framework for CLI help and log messages

#33 fmalmeida closed 2 years ago
3
add testing git actions for PRs

#32 fmalmeida closed 9 months ago
1
new directory called "final_output"

#31 fmalmeida closed 1 year ago
0
change to unicycler v0.5.0?

#30 fmalmeida closed 1 year ago
1
update documentation about the configuration in either config or samplesheet

#29 fmalmeida closed 2 years ago
1
Adding conda and singularity profiles

#25 fmalmeida closed 2 years ago
1