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- DNA topoisomerase IV complex
- A heteromeric enzyme, which in most bacteriophage species is composed of multiple subunits. Functions in chromosome segregation and can relax supercoiled DNA.
- Cell…
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Hi,
rnaEval yields -0.8 for GCGAGAC&GUGCGGC and ((...((&))...))
But if I apply the rules of the turner library 2004 I get -1.2.
The difference stems from the symmetric 3x3 internal loop:
…
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GO:0005487 nucleocytoplasmic transporter activity
is a
"molecular carrier activity"
not "protein transporter activity"
see
https://github.com/geneontology/go-ontology/issues/14331
https…
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### Primer3 for hairpins
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424584/
> The Primer3 package also provides two stand-alone command-line programs: oligotm calculates oligo melting temperatu…
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Program call, R/Python script
The rnafold program from the viennarna package produces the secondary structure of a given RNA sequence with the minimum free energy.
[RNAfold Help](https://www.tbi.un…
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This builds on earlier exploration in #280 (mappings). Mappings will be needed. @vrandezo + @danbri collaboration notes live here now.
Goal: we want to be able to write JSON-LD (or RDFa/Microdata) th…
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The desktop version of IGV is capable of generating and visualizing base pair (BP) tracks which depict RNA secondary structures as arc diagrams. I was unable to determine if this is possible (or plann…
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I apologize in advance if this is more related to the biology of RNA but I'm trying the following steps:
1. Load the file attached using RNAalignment
2. Copy consensus secondary structure to all
3.…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/FelixErnst/Structstrings
Confirm the following by…
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Hi RNAStructViz developers,
I am writing to report an issue with installation. I tried brew install gtDMMB/core/RNAStructViz. Below is the error message.
FOR A TOTAL OF LINES ( CHARACTERS) WR…