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Dear fellow researchers:
I have faced with several difficulties while trying to follow the API: **the Data recording and analysis** from (https://steps.sourceforge.net/manual/API_2/STEPS_Tutorial_D…
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**Describe the bug**
This is not a hard error, but it's an issue with the output of the analysis.
- For all the regulon markers including markers that should act in opposite directions the perturb…
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- [x] Is the class an entity or a process? Is it an information entity about a material entity/process, or a pure information entity/process?
- [x] Specify the ontology URI for class. Is there a hier…
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The test takes much too long to run. This creates a ton of problems. E.g. very long travis runtimes and also very long runtimes for the local tests. Tests should normally run < 100ms, upper bound is s…
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To enable using nfjax in TVB we need to have function(s) which can ingest a configured TVB simulator and build a suitable Jax function for running an equivalent simulation. The correctness should be …
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I've already simulated 22 autosomes for ~1.5M samples using the [`FixedPedigree`](https://tskit.dev/msprime/docs/latest/api.html#msprime.FixedPedigree) model and I'm wondering about how much work migh…
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```
What steps will reproduce the problem?
1. install SubstBMA add-on
2. choose *BEAST template
3. import alignments
What is the expected output? What do you see instead?
I would expect to see "Su…
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@sbenthall and I were discussing the move towards a 'frame'-oriented architecture (#798) today. He mentioned that something he was thinking about was how to deal with aggregate variables like `pLvlAgg…
Mv77 updated
3 months ago
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This is my very first time in julia, and i can't seem to follow the traceback and crack the problem. i have visited number of forums and i haven't found a similar issue. i checked out the birats examp…
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It seems like we should be able to implement an analog to RMSMC (https://github.com/tweag/monad-bayes/blob/master/src/Control/Monad/Bayes/Inference/RMSMC.hs, in particular `rmsmcDynamic`), which basic…