airr-knowledge issues issues

airr-knowledge / issues

Issues and project management for the AKC

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issues

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Determine desired changes to OBI Assay

#66 bcorrie opened 1 week ago
0
Odd behavior using LinkML json_dumper

#65 bcorrie opened 1 week ago
5
How do we extend Assay to incorporate AIRR-seq

#64 bcorrie opened 2 weeks ago
8
AKC objects don't have study specific fields

#63 bcorrie opened 2 weeks ago
1
Investigation should not have inclusion_criteria and exclusion_criteria

#62 bcorrie opened 2 weeks ago
4
Formalize VDJbase API with OpenAPI V3 spec

#61 schristley closed 2 weeks ago
3
data integration from IEDB

#60 schristley opened 2 months ago
1
Add chain/receptor to LinkML schema

#59 bcorrie closed 1 month ago
8
How are we going to represent AIRR sample processing in the AKC

#58 bcorrie opened 3 months ago
3
data integration from ADC

#57 bcorrie opened 3 months ago
18
How do we handle IDs that point back to originating repository

#56 bcorrie opened 3 months ago
1
Storing researcher assigned identifiers

#55 bcorrie opened 3 months ago
6
Determine what `x-airr` properties need to be added to AIRR Standards for LinkML.

#54 bcorrie opened 4 months ago
1
VDJServer's IgBlast

#53 schristley opened 5 months ago
0
AIRR-seq VDJ annotation workflows

#52 schristley opened 6 months ago
0
AIRR-seq pre-processing workflows

#51 schristley opened 6 months ago
1
AKC workflows for AIRR-seq from ADC

#50 schristley opened 6 months ago
0
Create initial Makefile rule for ROBOT export to SQL table

#49 schristley opened 7 months ago
0
Installation and configuration of staging server

#48 schristley opened 7 months ago
5
Aim 3.2B: Interim enhanced GUIs implemented

#47 schristley opened 7 months ago
1
move linkml enums into ak-ontology

#46 schristley opened 7 months ago
0
initial ak-tools with a suite of custom tools and tools pulled from repositories

#45 schristley opened 7 months ago
0
Aim 2.6B: Interim data propagation and provenance processes implemented

#44 schristley opened 8 months ago
0
Aim 2.6A: Assessment of data propagation and provenance

#43 schristley opened 8 months ago
1
Aim 2.5B: Interim query API specified and implemented

#42 schristley opened 8 months ago
3
Aim 2.4B: Interim validation processes implemented

#41 schristley opened 8 months ago
0
Aim 2.4A: Assessment of validation needs

#40 schristley opened 8 months ago
1
Aim 2.3B: Interim new knowledge algorithms implemented

#39 schristley opened 8 months ago
0
Aim 2.3A: Assessment of new knowledge algorithms

#38 schristley opened 8 months ago
2
Aim 2.2B: Interim integration algorithms implemented

#37 schristley opened 8 months ago
0
Formalize OGRDB API with OpenAPI V3 spec

#36 schristley closed 2 weeks ago
4
Aim 1.4B: Interim validation processes implemented

#35 schristley opened 8 months ago
0
Aim 1.3B: Interim data harmonization incorporated and automation complete

#34 schristley opened 8 months ago
0
Use cases collected (3.1B)

#33 schristley closed 8 months ago
1
CURIE conundrum

#32 schristley closed 2 weeks ago
21
Checklist for LifeEvent Class

#31 schristley opened 9 months ago
1
Consider patterns to be used to restrict sequence data in the AIRR (and other) objects

#30 schristley opened 9 months ago
1
Checklist for Rearrangement Class

#29 schristley closed 2 weeks ago
3
import AIRR Data Model into AKC LinkML

#28 schristley opened 9 months ago
43
Checklist for Simulation Class

#27 schristley opened 9 months ago
7
Checklist for Adaptive Immune Receptor Class

#26 KevinABurns137 closed 2 weeks ago
3
Checklist for Investigation Class

#25 schristley closed 6 months ago
6
Checklist for Participant Class

#24 bcorrie closed 7 months ago
39
Update readme, fix mkdocs error, project team link in code of conduct

#23 schristley closed 6 months ago
2
create SOT/ontology repo for AK

#22 schristley opened 11 months ago
9
Promote AKC awareness (3.3A/B)

#21 schristley opened 11 months ago
0
Query API architecture finalized (2.5A)

#20 schristley closed 7 months ago
2
Data elements for integration identified (2.1A)

#19 schristley opened 11 months ago
2
Knowledge architecture finalized (2.2A)

#18 schristley closed 7 months ago
5
Generate/document list of relations being used by each repository

#17 bcorrie closed 11 months ago
8