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To have a persistent link, here's the current script from DCAN: [SubcorticalAlign_ROIs.sh](https://github.com/DCAN-Labs/dcan-infant-pipeline/blob/247e19e5441cc814cea2f23720caeeb6c6aeadf8/fMRISurface/s…
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I was trying to test run the QUINT-workflow with Ilastik-segmentation of a confocal image and a brightfield image (of the same slice) registered in the WHSRat-v3-atlas.
The problem is that the brain …
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Hi.
I think something must have gone wrong with the projectsion of the shen atlas.
The vertices do not seem to be correctl.
![Uploading Screenshot 2021-10-15 at 15.01.04.png…]()
![Screenshot …
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Hi,
Thank you for a wonderful subcortical atlas. I am looking for the combined version of the atlas with Glasser cortical atlas. The github page only has Gordon or Schaefer ones.
Thanks,
Shil…
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Hello,
Thank you so much for creating this great pipeline!
Now I am using Connectoflow pipeline to create networks. For the labels_.nii.gz image, I used the aparc+aseg image (using Desikan-Killian…
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Error from an user:
I tried to test run the QUINT-workflow with the WHS v3-atlas and some of the brain areas were wrongly labelled.
As you can see in the attached image, e. g. "corpus callosum a…
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The following are issues that I have encountered while running Brain Atlas. There are both minor and major issues, therefore I create this checklist instead of opening multiple issues:
- [x] (1) Mi…
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Dear Nutil-community,
I was trying out the QUINT-workflow and, so far, it works pretty fine.
I registered my test-slice in the WHSRat-v3 with QuickNII, did some fine alignment with VisuAlign, ran …
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As part of a research internship I would like to use primo to investigate the genetic pleiotropy of human aggressive behavior, subcortical brain volumes and a set of NMR metabolomics summary statistic…
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I tried to run some analyses in the new version of Braph without reading any tutorials/videos. This is what I noticed so far:
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Issue 1) Installation of braph2genesis -> Takes ap…