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Hello, I'm trying to run the `RepeatModeler` + `RepeatMasker` process after updating Dfam from 2.0 to 3.0. I hit no issues running with Dfam 2.0 but after downloading the new `Dfam.hmm.gz` and unzippi…
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Restore the stock tabs that display categories templates to the home page. Along with, of course, building templates so they are not empty!
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I performed a gene enrichment in DAVID for DMR-mRNA overlaps, DML-mRNA overlaps, and flanking regions. The results can be found in [this lab notebook entry](https://yaaminiv.github.io/DML-Analysis-Par…
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From #1038 and #873.
Transposable elements should allow flipping of strands as well as indicate strands when created.
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Hi,
I have running TE transcript on my fastq but I only see gene ID in the output so I do not understand. Isn'it supposed to be TE families as well ?
I am quite confused. ..Here are the output. …
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Hi,
Hi, I'm getting an error running the following command in PASA:
`perl Launch_PASA_pipeline.pl --config alignAssembly.config --ALIGNERS blat,gmap --create --run --genome genome.fasta --CPU 20…
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Hi! yupenghe,
I am using methylpy first time and I am not very good in computer programming.
Any help will be much appreciated.
I am trying to map my paired-end reads to transposable elements o…
CS791 updated
5 years ago
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Hi,
I am sorry I am coming to you but I seem to have exhausted all my options.
I have installed funannotate in an LSF but I can't seem to get it to work. When I run funannotate check I get the f…
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Hi,
I cloned https://gitlab.com/BS-seq/ViewBS_testdata im my ViewBS folder.
But when running
`sh test_ViewBS.sh `
I get
...
> Subcommand: BisNonConvRate
> Sample list:
> Please provide --s…
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If I create a repeat region or other non-transcript element it gives it an implied unique name. Is this correct (with the realization that we need a better naming strategy) or should it give it the s…