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Hi Matthew,
I noticed a bug where a large clusterSize in BatchSpectrumClusters.cpp prevents maracluster from progressing.
I ran a data set from cyanobacteria, 10 samples with each file about 300…
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I've tried to run the readNWISuv command for p-code 95202 (cyanobacteria/blue green algae), but I'm getting zero data returned for time periods that I know have data in Aquarius. I can pull in other p…
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Hi, I tried to run trimgalore but I have this error every time...
Can someone help me
Kind regrards
(base) deepbio@deepbio-virtual-machine:~/Documents/Genomes/Genomas_GATC/Cyanobacterias/LN$ ~/T…
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https://github.com/ropensci/taxa/blob/2956cd625d572111270e71239b8d13ef062a8665/R/taxonomy--class.R#L1079
On multiple computers, I've had issues with the `taxa::taxonomy_table` function not adding the…
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Here are some possible benchmarking scenarios for the Unipept API
- analyse metaproteomics data sets (use sample data sets available from the Unipept website)
- analyse shotgun metagenomics data sets …
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Here are a couple of problems I've identified that some implementation of a geofence could help solve.
- Assessors want to know if their GPS "Accuracy" is actually accurate and they are in a predef…
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Hi,
I'm trying to run classify.seqs command on Silva LSU database. I obtained fasta file from SILVA web site.
Transform taxonomy to create taxonomy files. I tried to run the command on my data wit…
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Hi!
does phyloseq have a function that can summarize by taxonomic rank, like QIIME (http://qiime.org/scripts/summarize_taxa.html)?
I didn’t find anything, so I made my own functions, see below. (I y…
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I'm having trouble getting an ordination plot without samples. All I want is the OTU ordination plot as in [phyloseq](https://joey711.github.io/phyloseq/plot_ordination-examples.html#(1)_just_otus).
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@JanDajka the benthic man. Can you help me identify which categories should be included in our new rubble and turf regime covariates? The benthic taxa vary between regions, with some surveys including…