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Lately we've been discussing stake weights and came to the conclusion in IRC that only approx 60-100mil GRC are staking at any one time out of the current total supply of 379,376,868 which works out t…
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When running a _very_ large number of simulations using different upper bounds for reactions in the model, some times GLPK cannot find a solution. In the rare event is happens (one every few hundred t…
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### Background
The [Systems Biology Simulation Core Library (SBSCL)](https://github.com/cogsys-tuebingen/SBSCL) is a collection of classes for simulating computational systems biology models in a Jav…
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Kicked off by this post: https://groups.google.com/forum/#!topic/julia-dev/pQG6bSglkjc, maybe the home page should get a redesign. This issue is a location for discussion and brainstorming ideas for s…
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#### Problem description
Running `memote report snapshot -a "-vv"` on the iJO 1366 model results in 8 `TypeError` exceptions. All the errors occur in `test_biomass.py`. The specific functions these…
siddC updated
6 years ago
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### Background
A popular technique in systems biology is [Constraint-Based Reconstruction and Analysis (COBRA)](http://cobramethods.wikidot.com/). Toolboxes exist for this approach, of which [COB…
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New KISAO terms were added:
- dynamic flux balance analysis: kisao:KISAO_0000499
- DA-DFBA: kisao:KISAO_0000502
- DOA-DFBA: kisao:KISAO_0000501
- SOA-DFBA: kisao:KISAO_0000500