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It's not always easy to match `software_name` and `quote` (as present in the .csv files).
After applying some basic soft matching, I still have 138 distinct software names not matching the provide…
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### Submitter Name
Kyle Moad/Rachel Karchin
### Submitter Affiliation
Johns Hopkins
### Submitter Github Handle
kmoad/RachelKarchin
### Additional Submitter Details
We are the PI …
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Hi all again!
cc: @lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
I will start a issue column type at a time. Let's see if that makes easy to ge…
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Hi Kevin,
I was looking at some GIAB data this morning and found the link to your tool. I gave it a whirl with this command:
`vgraph repmatch --include-regions GIAB/HG001_GRCh37_GIAB_highconf_…
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Hi there
Congratulations on a very nicely written paper. I'm still absorbing it, but I wondered what I ought to do if using it on small genomes. Your documentation says you need 1 million SNPs in y…
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As you know some variants have multiple NM_ coded transcripts. For example in this variant http://myvariant.info/v1/variant/chrX:g.153296529G>T, there are 7 different HGVS coding transcripts.
Is My…
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Hi,
I am just wondering if this work flow works with 10x data?
Wilson
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Hello,
I was wondering if the Gene Filter can be used in command line. I am running oc on a WGS vcf file and my command looks like this:
`oc run file.vcf -l hg19 -a clinvar -t text excel`
The…
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Dear Team,
I am trying to run the fine-mapping-inf. Thanks for the fantastic software.
I have used the command below to generate LD files.
plink --bfile /gpfs/scratch/najeeb/VCFAfilesAnnotat…
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I've been trying to run BayesTyper on a VCF file ([uploaded here](https://gist.github.com/Parsoa/1e5407b6f45ab54a6736f7d8a234fa1f) which is basically the merged set of calls from HG00514 and HG00733 f…