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Hi plotgardener team! :)
I was recently interested in surveying Hi-C regions with intrachromosomal translocations. I have often seen these represented in triangle plot form, as below ([Wang et al 2…
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I keep getting this error in the log:
`ERROR [__main__] A JuicePass Proxy task failed: ConnectionRefusedError: [Errno 111] Connection refused`
Here's what's in my juicepassproxy.yaml
```
ENE…
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Hi,
I am trying to install it on HPC (PBSpro) but II got this error.
Followed "Developing the Snakemake pipeline"
1. Conda activated: tox and snakemake
2. git clone pore-c.git
3. cd pore-c
…
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# Juicebox Contest QA Report
## Summary
The following QA issues were found during the code audit:
1. Unspecific Compiler Version Pragma (10 instances)
2. `block.number` may exceed `type(uint32).max…
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It could be useful to implement the newer version of BNEWT in Juicebox and see if it behaves any better on hard-to-normalize matrices.
Matlab code:
Appendix. The symmetric algorithm
function [x,r…
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### The problem
Enel X is migrating from JuiceNet to JuicePass.
Received email stating:
> To provide you with the best user experience and new functionalities, we are transitioning to a new a…
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hello
it's show that the REPcluster module not install, but via the pip install its always fail
![image](https://github.com/zhangrengang/Centromics/assets/101324838/24c57579-c9ef-4c31-a8c2-99c14f0f4…
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There is an issue while browsing for file on OSX 12.1 with AIR 33.1.1.713.
First time we use the Browse dialog for image files, it's working as expected.
Second time, during the same session the bro…
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Hi,
When I ran "/path/to/HapHiC/haphic plot out_JBAT.FINAL.agp HiC.filtered.bam", a very Hi-C contact maps appeared. Oddly, this is not the case in Juicebox.
[contact_map.pdf](https://github.com/…