nanoporetech pore-c issues

nanoporetech / pore-c

Pore-C support

Mozilla Public License 2.0

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issues

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Add deprecation notice

#62 eharr closed 1 year ago
0
Bump certifi from 2021.5.30 to 2022.12.7 in /requirements

#61 dependabot[bot] opened 1 year ago
0
installation

#60 SungUk opened 1 year ago
0
Run pore-c from PC

#59 Oksanak22 opened 1 year ago
0
create_hic error WARNING: sun.reflect.Reflection.getCallerClass

#58 OZTaekOppa opened 2 years ago
0
Bump distributed from 2.30.1 to 2021.10.0 in /requirements

#57 dependabot[bot] opened 2 years ago
0
Bump distributed from 2.30.1 to 2021.10.0

#56 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.19.5 to 1.22.0

#55 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.19.5 to 1.22.0 in /requirements

#54 dependabot[bot] opened 2 years ago
0
graph-based concatemer alignment

#53 callumparr opened 2 years ago
3
Installation & module error

#52 OZTaekOppa opened 2 years ago
3
error message during conversion to cool format

#51 erbon7 opened 2 years ago
0
Down-weighting pairs like SPRITE

#50 jessakay opened 2 years ago
0
Bump dask from 2.30.0 to 2021.10.0

#49 dependabot[bot] opened 2 years ago
0
Bump dask from 2.30.0 to 2021.10.0 in /requirements

#48 dependabot[bot] opened 2 years ago
0
Docs

#47 eharr closed 3 years ago
0
Create python-package-conda.yml

#46 eharr opened 3 years ago
0
nanopolish call-methylation fails with many bad fast5s

#45 will-NYGC closed 3 years ago
3
mnd file

#44 taskina-alena opened 3 years ago
1
Minimum number of contacts for pore-C analysis

#43 antarikshtyagi closed 3 years ago
1
Develop

#41 eharr closed 3 years ago
0
Bio.Alphabet removed

#40 natforsdick closed 3 years ago
3
multi-way contacts file

#39 erbon7 opened 3 years ago
3
pore_c pairs to-matrix fails

#38 bistace closed 4 years ago
1
Questions when exploring the align_table and pair files.

#37 LIZW2019 opened 4 years ago
2
added mean qscore calculation to fastq parquet generation

#36 proinde closed 4 years ago
0
Merging Salsa beds from multiple experiments

#35 claumer opened 4 years ago
3
Python TypeError in refgenome catalog step

#34 claumer closed 4 years ago
3
parquet format

#33 skoren closed 4 years ago
2
Use pyranges for overlap logic

#32 eharr opened 4 years ago
3
Why use ncls + pandas instead of pyranges?

#31 endrebak closed 4 years ago
3
Update README to include download links

#30 eharr closed 4 years ago
0
Thread ks

#29 proinde closed 5 years ago
0
Prerefactor additions

#28 proinde closed 5 years ago
0
Adjacency fix

#27 proinde closed 5 years ago
0
Added a way of storing information about which fragments are non-adja…

#26 proinde closed 5 years ago
0
Add fixed-width restriction digest strategy

#25 eharr closed 4 years ago
0
reference contigs without restriction sites cause fragment_id skipping

#24 proinde closed 4 years ago
0
Frag dag

#23 proinde closed 5 years ago
0
Binning

#22 proinde closed 5 years ago
0
tie breaking

#21 proinde closed 4 years ago
0
Bulk bed overlaps

#20 proinde closed 5 years ago
0
distance distribution and matrix correlation

#19 proinde closed 5 years ago
0
Contact logging

#18 proinde closed 5 years ago
0
Contact logging

#17 proinde closed 5 years ago
0
Contact logging

#16 proinde closed 5 years ago
0
Ensure that last fragment is added to FragmentMap

#15 eharr closed 5 years ago
0
reference bed lacks last fragment

#14 proinde closed 5 years ago
1
"method" option is never referenced

#13 proinde closed 4 years ago
0
Prevent interval tree from seeing alignments that are negative or zer…

#12 proinde closed 5 years ago
0