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We implemented OMOP CDM version 6.0 last year (prior to release of version 5.4 release) being the most recent version at the time. Since then we looked at potentially utilizing OHDSI tools such as A…
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Need a user account and role in Snowflake. The role should possess privileges to access and read all schemas and tables within the specified account. Additionally, it should be capable of creating fil…
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**Problem background:** I recently discovered that not all SQL flavors adhere to having case insensitive column names in their tables. Although according to the OMOP CDM documentation for v5.4, it wou…
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We (Hospital de Denia) have executed the feasability step and the process ended with no errors, but the csv files obtained as result had no content.
The only check we came up with was to filter conte…
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[results.csv](https://github.com/Missouri-BMI/OMOP_ON_P_CDM/files/14606545/results.csv)
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When running the R2RML-F engine, I got the error r2rml.engine.R2RMLException: ERROR: relation "mimicredux.cost" does not exist. Probably this has to do with missing data in the OMOP-CDM database (issu…
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I think one of the challenges with keeping Eunomia on CRAN is the size of the package. The mini CDM embedded in Eunomia is 5.1 MB. Additionally it would be very helpful to allow for the possibility o…
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I'd like to propose a new feature for the CirceR package. The functionality I envision would enable CirceR to take a conceptSetExpression in JSON format and return the equivalent ConceptSet in OHDSI S…
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# Observation_concept_id
## CDM or THEMIS convention?
CDM
## Table or Field level?
Field
…
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I'm trying to convert data from OMOP format to MEDS format. I have "person.csv, measurements.csv, condition_occurrence.csv' tables in an omop folder in my workspace. I run the meds_etl_omop command bu…