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Hello,
I hope that you can help me with this :
Can I use nanocaller on my fastq.gz files generated using ONT minion technology ?
Can I use it to detect variants in fungus ?
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Hello! I am writing seeking help with primer removal in cutadapt. I have Paired-end sequences, sequenced with Illumina. Illumina's own software removes index and adapters that are not of interest to…
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Hi @benjjneb this isn't an issue with dada2 but more a general question. We're using a slightly modified version of the big data workflow implemented in Nextflow for processing PacBio data, but the k…
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Hi @Meghana9854 @roseedwin , I just came across your amazing paper, and I wanted to implement the approach you proposed for my soil shotgun data. Looking upon your methodology, it seem you relied on a…
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Running to an issue with variant assignment of omicron datasets with the ARTIC pipeline reverts variants to the reference despite sufficient read support for the variants in the bam file.
The variant…
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Hello,
I was wondering if you knew of any good publicly available datasets for the V3 Artic Tiling Amplicon sequencing of hCoV-19. Ideally I would love to have a test dataset showing each of the v…
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For example,
Simply changing
**a**cerates viridiflora (raf.) eaton
https://api.gbif.org/v1/species/match?name=acerates%20viridiflora%20(raf.)%20eaton
to
**A**cerates viridiflora (raf.) eaton…
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## Paste the link of the GitHub organisation below and submit
https://github.com/nanoporetech
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We need to do a 'true' power analysis for readcomb - we know it detects phase changes, but how often do we expect it to actually catch them in real data?
We've looked into [ART](https://academic.o…
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`cnvkit` output files are missing. There is no segmentation file `.cns` and scatter and diagram plot files `.pdf` in the output folder. They are not generated by `cnvkit batch` module.