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Hi,
When I use the abraom annotation, for most variants it gives me 3 columns, but for some variants the abraom annotation returns two columns in the .txt file, and a truncated .vcf result (stopped a…
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Thanks to Customprodbj, it is a great project, there is no better package yet.
but I encountered problems during the operation, as follows
OS
```
└─(21:09:14)──> cat /etc/redhat-release …
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Hi. Is there any specific/compatible annotation tools that i could use apart from ANNOVAR to annotate outputs of MosaicHunter. I tried ANNOVAR, but, it does not seems to work with the output files of …
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I had a VCF already annotated by AnnoVar that I wanted to run Intervar on. I used the following command:
`python Intervar.py -b hg38 --input_type=VCF -i xaa.vcf -o output --skip_annovar`
It successf…
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hello,thanks for the good work with cute variant :). i'm looking for a software to look for annovar output file.
annovar is a classical variant annotation software, it can be great to support tsv an…
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Hi,
I am trying to run python CancerVar.py -b hg38 -i input.vcf --input_type=VCF -o ./results/. which does not work because hg38_icgc21.txt is not available.
/data/software/annovar/annotate_…
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Hi, I just tried to load a VCF file where info fields' names contained points:
```
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=…
Hoeze updated
3 years ago
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Dear Prof. Wang,
I meet an trouble to prepare `gwasCatalog` similar format files. I downloaded gwasCatalog from gwasCatalog website, rather than UCSC and then reformat it as "chr\tstart\tend\anno"…
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Dear professor Kai:
I am working with mycobacterium tuberculosis genome (H37Rv). I have downloaded GFF3 from NCBI and converted to gtf (using gffread). Refgene db was built as given here : https://…
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74ページの210_prep-annovar-dbsを実行したところ、
WARNING: cannot retrieve remote files automatically (by 'wget' command or by standard Net::FTP/LWP::UserAgent Perl module).
Please manually download the followi…