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When running locally using current master 0a39776e08e319af63cdb596849bbf8ef9b3ce4d
- on fedora 38,
- uname-a: `Linux fancy 6.8.9-100.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Thu May 2 18:50:49 UTC 202…
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Snakebids currently prohibits the scenario in the title with a `ValueError`. As far as I can tell, this prohibition is arbitrary, and it has caused inconveniences for me. In some of my workflows, I ha…
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Hello,
I'm running the MSBP pipeline on apptainer using the following command, 'multiscalebrainparcellator_bidsapp_entrypointscript /path2bids_dir /path2_output_dir/ participant --participant_label…
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** General summary **
I've just realized that the newer BIDScoin [hard-codes the path to `.bidscoin` directory](https://github.com/Donders-Institute/bidscoin/blob/8c9a3692feec15276e0f6570dc0386ff96ee…
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As I develop a Docker App using mne-bids-pipeline, I want a straightforward way to overwrite the bids_root and deriv_root values defined in the configuration file from the command line. This enhanceme…
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Discussion in #104 raised the idea of getting BRAIN Initiative funding to support ongoing maintenance. I'm starting this thread for discussion of what that support might look like.
I'm envisioning …
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## The problem
In the latest versions of Snakemake (7.3 I believe), the shell code, inputs, parameters, and environment are tracked by Snakemake, and if they ever change, a rerun of the affected ru…
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I've had a quick read through the documentation for both BIDS and BidsCoin, but I can't find a clear answer on what to put in the IntendedFor field.
I think I'm having a little bit of trouble unders…
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Error encountered when installing the PUMI requirements
"ERROR: pybids 0.15.5 has requirement click>=8.0, but you'll have click 7.1.2 which is incompatible."