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Hey Bernardo!
Random question. When you predict across the dm3 genome, how do you save the outputs and then convert them to bigWig tracks that nicely match the STARR-seq bigWigs in magnitude? Maybe…
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Hello,
Recently there was some work with BED files and RefSeq/Genbank chromosome IDs which typically have a period in them for versioning purposes (e.g. "NC_000001.11"). This is currently not allow…
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- [ ] BigBed
- [ ] BigWig
- [ ] VCF
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- [ ] BigBed
- [ ] BigWig
- [ ] VCF
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## GTF to bedgrah12
How to convert GTF format into BED12 or BIGBED format?
```
# see below for UPDATES that include more shorter ways of conversions
# How to convert GTF format into BED12 form…
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Those files are bigBed instead of bigWig?
And one question tho is that what are those files? Predicted cell-specific enhancers and promoters from PLAC-seq?
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Sorry I could not come for the seminar today. I have downloaded the data but could not push to the repo because of the large data size. Any way to upload data with a size (100-200MB) to Github?
For y…
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Show bigBed files in autocompletion/Open as Multiple locations action. So get ~ bed files behaviour
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Hello,
We are using `gemBS` version 3.5.1 and the [IHEC standard configuration](https://github.com/heathsc/gemBS/blob/master/gemBS/etc/gemBS_configs/IHEC_standard.conf). When loading the ENCODE-sty…
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Add support for file specific track configurations for:
bam
bigWig
bigBed
tabixVCF