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It's past time we bumped dependencies and package builds to newer versions, as we've run into a number of dependency issues recently.
Suggested default and supported configs below:
#### Default:…
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Some input data will use different codecs for different series; slide pyramids will often be compressed differently from the corresponding label/macro image. See https://github.com/ome/bioformats/pull…
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This is what I'm typing into linux:
./bftools/bfconvert -debug -tilex 512 -tiley 512 -series 0 -compression LZW leica.scn leica_MAX/leica.tif
Here is the link to the rose red image:
https://github.…
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This is what I'm typing into linux:
./bftools/bfconvert -debug -tilex 512 -tiley 512 -series 0 -compression LZW leica.scn leica_MAX/leica.tiff
Here is the link to the rose red image:
https://g…
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Hi guys,
I just cannot figure out what causes the problem shiwn below. Any ideas?
Sebi
Python 2.7.11 |Anaconda 2.4.1 (64-bit)| (default, Jan 29 2016, 14:26:21) [MSC v.1500 64 bit (AMD64)] on win32
…
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Hi guys,
the new BioFormats 5.2.1 contains some new really cool features like the new multi-resolution API. Here you can find an example:
https://github.com/openmicroscopy/bioformats/blob/v5.2.1/com…
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Hi,
I would like my script to be able to check wether video files are compatible with its reader, and skip files that aren't.
For now, I'm only dealing with TIFF files with imageio, but I'm planni…
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I've been converting a copius number of VSI images to bigtiff as our toolings won't work with VSI. I know bioformats insists on decoding and re-encoding image tiles when converting but since no loss …
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This is what I'm typing into linux:
./bftools/bfconvert -debug -tilex 512 -tiley 512 -series 0 -compression LZW leica.scn leica_MAX/leica.tif
Here is the link to the rose red image:
https://gi…
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Hello ijp-kheops team! I'm helping out a team close to me with slide digitization, I'm trying to incorporate this library into a script and workflow. I'm starting with a sequence of tiff images that h…