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I'm looking into using sourmash to find the max ANI of a new sample to existing sequences. I can do this either straight from the reads or assembling first and then searching using the assembly.
I …
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Seems that at some point sourmash newer version requires an updated LCA database, I got failure with v4.2.2 and the one we have pinned in resources.py. New link is https://osf.io/9xdg2/download and p…
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This is probably a general canvasXpress question but since I'm using canvasxpress-react I'll put it here. I'd like to take advantage of the info div that appears when you mouse over a point on a Manha…
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The following script returns a 500 and partial JSON response about 90% of the time:
```
#!/bin/sh
URL=https://mines.legumeinfo.org/beanmine/service/query/results
QUERY='58145958582593465826175…
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On the 'gene summary' pages, an number of the visualisations are not configured:
MSA viewer
Protein visualizer
JBrowse
All of the template are giving "invalid query"
@kimrutherford
(We ma…
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Could you let me know what API to use to send a list to InterMine?
Thanks!
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For lab meeting in two week, I want to host a "GitHub Flavored Potluck".
This will be a "show & tell" style meeting where everyone shares some of their favorite GitHub repositories. Like a potluck…
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what this means in practical concerns is not clear, but...
cc @bluegenes
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ref https://github.com/sourmash-bio/sourmash/issues/1652, you want to be able to sketch certain ksizes/moltypes for certain identifiers only, but on a large scale. how can we best do this?
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@luizirber and @bluegenes and I have been getting more excited about a `sourmash taxonomy` command, and potentially tackling pieces of it in a DIB lab hackathon. We had a conversation about this and w…