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stajichlab
/
AAFTF
Automatic Assembly For The Fungi
MIT License
19
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AAFTF filter urllib issue
#29
Okompath
closed
3 weeks ago
0
aaftf filter URL issue
#28
Bambi3024
opened
2 months ago
2
spades assembly failed
#27
Gian77
opened
2 months ago
4
AAFTF pipeline exiting when mito fails
#26
Kata-Pa
closed
4 months ago
3
masurca polca.sh breaks with recent samtools
#25
hyphaltip
closed
11 months ago
1
Update environment.yml with pip depend
#24
hyphaltip
closed
11 months ago
0
Feature fcs gx purge
#23
hyphaltip
closed
12 months ago
1
Do vecscreen and sourpurge have similar functions?
#22
maruiqi0710
closed
11 months ago
6
error when running AAFTF filter and AAFTF vecscreen
#21
njliangdong
closed
11 months ago
5
[Enhancement] Assembly for Nanopore reads
#20
llk578496
opened
1 year ago
2
AAFTF pipeline always fails at vecscreen step
#19
rfitak
closed
1 year ago
2
Pipeline fix
#18
nextgenusfs
closed
2 years ago
0
Sourmash gtdbr07 rs207 update
#17
hyphaltip
closed
2 years ago
0
Mito assemble
#16
nextgenusfs
closed
2 years ago
0
sourmash LCA database update url?
#15
nextgenusfs
closed
11 months ago
18
Add racon as polishing step
#14
hyphaltip
opened
2 years ago
0
Out of Memory on default pilon run
#13
hyphaltip
closed
3 years ago
1
Fix namespace
#12
gamcil
closed
3 years ago
0
After to setup of the requirements, how to install? Is it necessary a sudo user?
#11
nickolasmenezes
closed
3 years ago
4
Add GC% in 'assess' command
#10
hyphaltip
closed
3 years ago
1
support other assemblers: dipspades
#9
hyphaltip
opened
4 years ago
1
Change mitochondrial genome database FTP link
#8
gamcil
closed
4 years ago
0
Integrate NCBI tax tool in screening
#7
hyphaltip
opened
4 years ago
2
Specify version numbers of all sub-tools
#6
hyphaltip
opened
5 years ago
0
Merge no workdir to master
#5
hyphaltip
closed
5 years ago
0
use bbduk.sh (BBMap) for filter step instead of bwa/bowtie matching reads
#4
hyphaltip
closed
5 years ago
6
Generate command list as top-level running
#3
hyphaltip
opened
5 years ago
1
Support single-end and interleaved fastq data
#2
hyphaltip
closed
2 years ago
3
different gunzip/gzip options on osx/linux in vecscreen.py
#1
hyphaltip
closed
5 years ago
3