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We observed that in the **metrics_summary.xls** file under **04.report**, the cDNA Number of reads is **1,858,750,737**, but in the **anno_decon_sorted.bam** file under the **output** directory, there…
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**Describe the bug**
In r.in.pdal, when the n option is used to count the number of points per cell, only 1-2 percent of the number of points that fall in the cell are reported.
**To Reproduce**
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On Windows 11 with Jupyter Version: 7.2.1 and cell running Java code.
In my scenario I used sleep function for 10s.
Unexpected behavior: the counter starts counting from some non zero position.
…
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Hi,
Firstly, I want to express my gratitude for developing such a useful tool for efficient cell segmentation.
However, I've encountered a limitation in the current version of SOPA. The tool does an…
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I am getting an error when I try to get the call graph in this situation. I'm on the latest commit on main. Here is a MWE:
```
from Qualtran.qualtran.bloqs.reflections.reflection_using_prepare imp…
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- command: `ruff check .\src\test.ipynb --fix --diff`
(No panic when `--isolated` included)
- ruff version: 0.7.4
- pyproject.toml
```toml
[project]
requires-python = ">=3.13"
dependenc…
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Errors remaining:
error - a_study_protein-protein interaction detection_protein microarray.txt
Invalid ISA-TAB: unexpected field Derived Data File found in section transcriptomics_pipeline
warning -…
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### Is your feature request related to a problem? Please describe.
I'm working on a game where a board state is easily represented by a binary number (0=cell empty, 1=cell full). It's useful to know …
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At the moment we report the fraction of unindexed reflections but this does not give you a hint as to why they are not indexed, i.e. are they a second lattice or just spots from microcrystalline ice?
…
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Hello STAR team,
Thank you for the nice tool, i use it a lot.
Currently i am trying to run STARsolo on a SMARTseq2 dataset GSE209742.
I have downloaded all the fastq files and created a manifest…