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As a bioinformatician,
I want to be able to set the action in StatusDB, the ticket number, customer, pipeline and delivery type when downsampling a case,
So that new cases do not have to be manu…
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https://github.com/clinical-genomics-uppsala/Twist_DNA/blob/25abfa87e187e8307546e3d49e6bab380a8f1b4a/src/Snakemake/workflow/Twist_DNA_workflow.smk#L13
Smeds updated
3 years ago
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Should the sequencing depth of different datasets and batch effect issues be considered when merging RNA-seq data from different cohorts for input?
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Validate workflow document to track clinical process.
Shared and validated to make sure it's updated in the right way.
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**Describe the solution you'd like**
The MIG will publish a Workflow Request event to inform the MWM that the results have been received and to continue. The MWM workflow initiation logic will need t…
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As a prodbio
I want to be able to click on a link that goes directly to the tower analysis,
So that I can get information I need faster.
Note: changes would be needed on TB side and then cigrid wou…
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Prior to this proposal we have reached out to the CRAN task view editors regarding a possible update of the existing ClinicalTrial task view. They advised using this issue to propose a relaunch that c…
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The current backend we are using with Cromwell on GCP is deprecated and will be turned off **July 8, 2025**. Google now recommends migrating to Google Batch:
https://cloud.google.com/life-sciences/do…
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Adding some context to the visualization so they understand it better (on top of the paired clinical workflow).
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### Description
During integration tests of balsamic 15.0.0: https://github.com/Clinical-Genomics/BALSAMIC/pull/1422 the test WGS T+N case did not finish running. One identified issue there was that …