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## Short description of the problem
When running `anvi-get-codon-frequencies`, there is a TypeError in how pandas is used in `_make_gene_codon_frequency_table`.
## anvi'o version
```
Anvi'o …
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Hello Developers,
I have run the MTBseq pipeline for my 6000 TB samples.
I noticed that some mutations are repeated in the same .tab file.
I don't understand why is it so,
So shall I consi…
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defines `test.proto`
```protobuf
syntax = "proto3";
package tutorial;
enum PhoneType {
MOBILE = 0;
HOME = 1;
WORK = 2;
}
message Person {
string name = 1;
int32 id = 2;
Ph…
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Hi,
When I use EVM to integrate gene prediction, I encounter some genes without a start codon and/or stop codon. But I have used '--stop_codons TAA,TGA,TAG' parameters.
PASA, Cufflinks, Stringtie …
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Would be cool to allow users to input custom codon usage tables and/or draw from the database here https://dnahive.fda.gov/dna.cgi?cmd=cuts_main
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I was making a shorthand for the Codon compiler with codon itself and ran into an issue when trying to compile, which it only threw when I tried to use “os.path.isfile” to check if a file existed. I d…
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Much of the pipeline proceeds until seq is translating presumably detected Ig sequences. It repeatedly terminates with the "Codon 'GET' is invalid" error
pdoris$ python run_iterative_igdetective.py…
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[link](https://github.com/bebop/poly/issues/247)
This is still a feature that is needed, and needed even more for the basic API!
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We need to create a dynamic library in C or C++ that executes a callback every 1 second. The callback should be defined within the scope of the program that imports the library. We are investigating t…
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Will probably need to fix this while addressing #21.