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See [https://epidemicsonnetworks.readthedocs.io/en/latest/EoN.html](https://epidemicsonnetworks.readthedocs.io/en/latest/EoN.html) for Python implementations - just the analytic solutions for now
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As a general goal for the redesign of the backend, we want a situation where it is easy to create new models, or adapt existing models by copy-pasting a directory. The code could either be designed in…
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I would like to propose a stochastic simulation tutorial that teaches using random variables generated from NumPy to simulate various situations and solve problems. The general outline for this tutori…
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For example:
```R
models
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candidates:
- igraph (library used in SoilRexp and dependency of py2cytoscape)
https://igraph.org/python/doc/tutorial/tutorial.html#creating-a-graph-from-scratch
- pro:
- nice layouts
…
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Write text; make the diagrams look good
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### Description of the issue:
Traditionally, identifiers have been used to encode various types of information, e.g., a metabolite's compartment. While this approach might lead to recognizable disp…
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Along the lines of what Ivan was suggesting for the `ConnectionRule` syntax, combined with my suggestion of a wider variety of ports, what do you think of this proposal for user-defined function compo…
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# Brief description
A model of a drosophila motoneuron is available on OSB in XPP (and other fomats): http://www.opensourcebrain.org/projects/drosophila-acc-l3-motoneuron-gunay-et-al-2014
The XPP ver…
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Looking at the example of patchy connectivity in the CSA paper (see #72), reminded me of a connectivity pattern I will need for one of our models. Similar (if not the same) to the patchy connectivity …