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Hello, I am a CWL rookie. I want to use the Immuno.cwl to detect neoantigens. It makes me confused that (https://github.com/genome/analysis-workflows) contains too many CWL processes. Is there a descr…
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Could we create a template git repository for users to download, rather than having them initialise a repository themselves? e.g. [https://github.com/bioexcel/biobb-cwl-tutorial-template](https://gith…
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Only 3 entries there have associated CWL tool descriptions:
Possibly by doing a bulk-update to https://github.com/research-software-ecosystem/content
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## Bug Report
### Expected behaviour
When the cwl path is something like `/cwls/cgpmap-bamOut.cwl` with an include that is `includes/doc.yml`, the doc.yml's content should appear in the UI2's descrip…
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CWL allows to describe tools/pipelines/workflows and enhances reproducibility. Hoverer, describing is not only about how to run or technical info about execution environment but also about what this …
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During the "Cloud Work Stream @ GA4GH 8th Plenary 2020" meeting [it was proposed](https://docs.google.com/document/u/0/d/1oAf-WF7NUPijVOhAaarDeQrAjsDFHmd7CdTOSGWuGp0/mobilebasic) that the `workflow_pa…
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This should be added in output binding definition in spec, and conformance tests (for drafts and 1.0) which uses args.py need to have output with id args.
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Description: create a nightly test that executes N (=2?) CWL workflows using the Airflow API, or the WPS-T API
Acceptance Criteria: demonstrated successful execution of nightly Github Action
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The tool does not provide any output if the parser is instantiated with the prog keyword. e.g. for foo.py that contains `parser = argparse.ArgumentParser(description='A description', prog='some prog n…
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Update part 2 to reflect that fact that you:
GET a process **description** from `/processes/{processId}' (same terminology is used in part 1)
and you POST a process **definition** to `/processes` to…