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Hi @apahl , in a JUMP cell painting meeting someone pointed to this file in this repo here (https://github.com/mpimp-comas/2021_grigalunas_burhop_zinken/blob/master/cpa.py). In it, I noticed that the…
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Sometimes both, strong positive and strong negative correlations are meaningful, so we should allow for that.
One way to do this is to add a boolean `absolute_value` argument to `pairwise_cosine`
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> Additionally, I also encountered a package dependency issue. Specifically, the script was able to run when I uninstalled `pandas`, but gave an error when `pandas==2.1.1` is installed. I am not sure …
d33bs updated
11 months ago
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### File location of the documentation
https://github.com/cytomining/pycytominer/blob/main/CONTRIBUTING.md
### Documentation issue
We need to define our process for determining maintainer status, b…
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This issue focuses on a sporadic issue witnessed on the MacOS image while running `pytest` tests for CytoTable from GitHub Actions with a repeated error message:
```text
parsl.jobs.errors.TooManyJ…
d33bs updated
4 months ago
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described in broadinstitute/cell-health#17
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Discussed in https://github.com/cytomining/pycytominer/issues/195#issuecomment-1217265110
Add Memory/Time Testing Constraints for .merge_single_cells() (or others! 🙂 ) (Something like [pytest-memra…
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Very optional (and slightly tangential to the PR focus): consider using the directory under `docs/source/_static` for storing the logo images (matching the `dataflow` markdown image belo…
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By disaggregating the `run_pipeline` function in a modular way
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We need a config parameter to switch augmentations on\off.
We can discuss here how to expand it if needed.