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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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I managed to prove out the GDA data sets available here:
https://drive.google.com/drive/folders/1eYhyDxQgQfOsVzJ30njNOk7ba-EegiBB
working specifically with `ctp_state_data.tsv`.
You can proce…
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9de029f9d00e2957e001042724053c9fbbfbe400
[Progress Report](https://github.com/STAT540-UBC/team_Undecided/blob/master/progress_report.md)
@ppavlidis @singha53 @farnushfarhadi @santina
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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Write up a to-do list describing what we say we will do for analysis. Include it as a formatted comment below. Include sections as Main analysis, Secondary analysis, including all heterogeneity analys…
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Hi all,
I would like to know how can we obtain the global methylation % of a genome using modkit pileup.
I know that with the fraction modified I Can derive for example the % of methylated cpg, but …
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Hello!
When running `diffSplice`,I got this error:
`Calculating differential analysis between conditions: CCA_TE1 and CCA_no_TE1
ERROR:__main__:Unknown error: (, ZeroDivisionError('float division b…
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Hi there,
I wish to deconvolve my bulk RNA seq data with single cell RNA seq data from the same tissue. I run in to the following error when running the code line below and I do not understand why.…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
-
May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …