comprna SUPPA issues - Githubissues

comprna / SUPPA

SUPPA: Fast quantification of splicing and differential splicing

MIT License

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Issues reading transcript expression files

#190 ryanpe13002 opened 2 weeks ago
3
diffSplice error，a classic one: 'UnboundLocalError'. I have tried my best.

#189 gnilihzeux opened 1 month ago
4
"Differential transcript usage", the cognate gene expression?

#188 iamhealthy opened 1 month ago
1
Help about rank differential gene

#187 BourbonZhang closed 1 month ago
4
Error with diffSplice

#186 Tang-pro closed 2 months ago
4
psiPerEvent - "transcript not found"

#185 bvien24 opened 2 months ago
5
Help with generation of PSI results

#184 chandaayan opened 3 months ago
1
missing lib.tools

#183 theokirkland opened 3 months ago
1
Addressing Batch Effects in Datasets with SUPPA2

#182 XXuxi opened 3 months ago
3
Feature Request: Inter-sample PSI Value Comparison for Large Datasets in SUPPA2

#181 XXuxi opened 3 months ago
1
U12 splicing event

#180 jiehuichen opened 3 months ago
4
diffSplice Error

#179 liuyh99 opened 4 months ago
6
generateEvents option returning empty .ioe files

#178 ArnavBharti opened 4 months ago
5
IndexError while using generateEvents

#177 ArnavBharti closed 4 months ago
4
about nan values

#176 fafuyyk closed 5 months ago
1
How to analyze mas-iso-seq data using suppa ?

#175 gygys opened 5 months ago
1
abnormal P-value from the "suppy.py diffSplice"

#174 gengbaobao opened 6 months ago
4
GTF input file

#173 dvirdi01 opened 7 months ago
1
Ioe files not showing desired output

#172 dvirdi01 opened 7 months ago
0
Seek a help of SUPPA2

#171 imustxyq opened 7 months ago
1
A question about calculating the adjusted p-value

#170 RacconC opened 8 months ago
1
cryptic exon

#169 rezarahman12 closed 8 months ago
2
No replicate samples

#168 gengbaobao closed 8 months ago
1
Clarification on Interpretation of PSI Values Approaching 1 or 0, and Determining Alternative Splicing.

#167 qingwangchen closed 8 months ago
4
None p-value was less than 0.05 after diffSplice

#166 Renee-SU closed 7 months ago
8
Calculate differential splicing events

#165 SSaleem94 closed 8 months ago
11
psiPerEvent problem

#164 zjanna opened 11 months ago
1
Problems on multipleFieldSelection.py

#163 Dongmeng-wang opened 11 months ago
0
psiperEvent not working

#162 SignorLab opened 1 year ago
6
psiPerIsoform resulting in empty .psi file

#161 TinyTasy opened 1 year ago
2
SUPPA not working on quantification

#160 Oliverfeudj opened 1 year ago
10
Can diffsplice deal with condition only has one sample（no replications）

#159 QingCheZhang closed 1 year ago
2
getting nothing in results simple identification of AS events

#158 Xtreme011 opened 1 year ago
5
PSI normalization

#157 Dongmeng-wang closed 9 months ago
4
generateEvents missies some Retained Intron (RI) events

#156 HegedusB opened 1 year ago
5
Multithread difftools.py

#155 tithuytrang closed 1 year ago
0
Multithread and asynchronous

#154 tithuytrang closed 1 year ago
0
Multithread ver

#153 tithuytrang closed 1 year ago
0
Regarding pvalues in diffSplice

#152 heebaanjum opened 1 year ago
1
Something went wrong with detection of A5 and A3

#151 gouwei1 opened 1 year ago
6
Why this regions were not regarded as RI ?

#150 gouwei1 closed 1 year ago
2
ERROR:lib.tools:['Unexpected number of fields. 3 expected, 2 given']

#149 KH11LLCH1NG closed 1 year ago
3
Wondering will SUPPA generate different results while using the same file?

#148 LitingKu closed 1 year ago
1
A problem occur in step 'psiPerEvent'

#147 Tomcxf opened 1 year ago
13
Definition of Positive and Negative is inconsistent with Fig 3 for 'Right' Alternative Terminal Exon Events

#146 lzx325 opened 1 year ago
0
Encountering errors when trying to process large numbers of samples with SUPPA2 DiffSplice

#145 saipra003 closed 1 year ago
1
DiffSplice significant results have dpsi values of 0

#144 marypiper closed 9 months ago
5
Problems replicating TRA2 tutorial results

#143 avilaHugo closed 9 months ago
3
ERROR:psiCalculator:No expression values have been buffered.

#142 emanuelaker closed 2 years ago
3
diffSplice --lower-bound doesn't work !

#141 ifreeman6 closed 2 years ago
4