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Hi! Appreciate the great work.
Is there a way to predict the structure of m6A modified RNA through this tool? I tried the web interface and I can't seem to find a way to incorporate m6A in the FASTA …
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CONSERVED UNKNOWN CHANGES
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Although these were in "conserved unknown" they had an existing process annotation and so they were not in the Open Biology unknown list:
- [x] SPBC9B6.03 endosomal …
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…
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Knock downed (in contrast to knocked out) gene is not mutated but its level of expression is manipulated, typically, by siRNA or morpholinos. Thus the term should be made a child term of MI:0223) un…
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__The problem__
Currently our character data is represented as follows:
```haskell
newtype ContinuousCharacter = CC (ExtendedReal, ExtendedReal)
-- where for the sake of completeness ExtendedRea…
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- [x] I believe this to be a bug with Open Babel
- [ ] This is a feature request
## Environment Information
Open Babel version: 3.1.0
Operating system and version: Ubuntu 21.04
## Expecte…
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I have used compareCluster to compute enriched pathways, and using dotplot function I want to plot only those pathways that have "T cell" substring in the description. Is there a way to do that? I kno…
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Hi, I am running QoRTs 1.2.26 on whole genome DNASeq BAM files. The BAM has around 138mil x2 PE 150nt reads mapped using BWA aligner. I initially gave it 8 cores and 64GB RAM and it failed. Then I gav…
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I used "trinotate_report_summary.pl" to generate a "cXp_summary.html" file, however, this html file shows up blank when opened in Google Chrome or Firefox.
Why?
and, here are the contents of the…
ljyls updated
3 years ago
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Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…