amnh PCG issues - Githubissues

amnh / PCG

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

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issues

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Statically link against `musl`

#167 Boarders opened 2 years ago
1
Invalid implied alignments

#166 recursion-ninja opened 4 years ago
1
getSubsetIndex bug

#165 Boarders closed 4 years ago
3
Efficient Character Representations

#164 Boarders opened 4 years ago
5
Add Distance Wagner method

#163 Boarders opened 4 years ago
5
Building the project on a fresh machine

#162 Boarders opened 4 years ago
8
Experiment with GC options

#161 Boarders opened 4 years ago
4
Upgrade to GHC-8.10.1

#160 recursion-ninja closed 4 years ago
2
Dynamic character re-rooting error

#159 Boarders opened 4 years ago
0
Use cabal's multiple libraries feature in cabal-3.0+ for our whole specification

#158 recursion-ninja closed 4 years ago
1
Add exit clean up

#157 Boarders closed 3 years ago
2
Use hpack for cabal file specification

#156 recursion-ninja closed 4 years ago
11
Assert that input chracters are in the alphabet when reading in a TCM file

#155 recursion-ninja opened 4 years ago
0
Character distance gives zero

#154 Boarders closed 4 years ago
1
Index error defect related to clustering

#153 Boarders closed 4 years ago
5
Add validation check to Read command

#152 Boarders opened 4 years ago
0
In new graph representation add validation module

#151 Boarders opened 4 years ago
0
Add back the CSV reporting command with cassava

#150 recursion-ninja closed 4 years ago
1
Find space leaks in code

#149 Boarders closed 3 years ago
2
Update all deriving statements to use DerivingStrategies and DerivingVia style

#148 recursion-ninja closed 4 years ago
5
Replace error with panic for improved debugging

#147 recursion-ninja closed 3 years ago
1
Upgrade to GHC-8.8.1

#146 recursion-ninja closed 4 years ago
8
Add integration tests for clustering

#145 Boarders opened 5 years ago
0
Profile our integration tests

#144 Boarders opened 5 years ago
0
Fix performDecoration for single node graphs

#143 Boarders closed 5 years ago
1
Write a k-medians clustering algorithm

#142 Boarders opened 5 years ago
1
Add a benchmarking suite for string alignment operations

#141 recursion-ninja closed 4 years ago
3
Add benchmarking suite for pcg-language parser

#140 recursion-ninja opened 5 years ago
0
Add a benchmarking suite for the file parsers

#139 recursion-ninja closed 5 years ago
2
Singleton gap state placed on root "ungapped" field

#138 recursion-ninja closed 5 years ago
3
TNT parser should use the cannonical IUPAC codes

#137 recursion-ninja closed 3 years ago
2
TNT xread correct the handling of "- interpretation flag"

#136 recursion-ninja opened 5 years ago
0
Implement partitioned FASTA

#135 recursion-ninja opened 5 years ago
0
Standardize newick string serialization

#134 recursion-ninja opened 5 years ago
0
Add a Cost type

#133 recursion-ninja opened 5 years ago
1
Add type parameter and MonadReader instance to Evaluation for "global settings"

#132 recursion-ninja closed 5 years ago
1
Add metadata information record

#131 Boarders opened 5 years ago
0
Add graph conversion

#130 Boarders opened 5 years ago
1
Add "clustering" wagner build option

#129 recursion-ninja closed 5 years ago
1
Add candidate network edge documentation

#128 Boarders closed 5 years ago
3
Add an "install accessories" script

#127 recursion-ninja opened 5 years ago
1
Explore seperate librarys and a unified cabal.project build and stack build

#126 recursion-ninja closed 5 years ago
2
Place Test.Custom.DynamicCharacterNode in a testing utilities library

#125 recursion-ninja closed 5 years ago
1
Rename the FFI.* module to something more descriptive

#124 recursion-ninja closed 5 years ago
1
Move MetricRepresentation to TCM library

#123 recursion-ninja closed 5 years ago
1
Have REPORT command move files if they exist instead of overwritting.

#122 recursion-ninja closed 5 years ago
1
Have FASTA parser rely on Alphabet.IUPAC module

#121 recursion-ninja closed 5 years ago
2
Rename the Node/Node2 PhylogeneticDAG/PhylogeneticDAG2

#120 recursion-ninja closed 5 years ago
1
The evaluation model doesn't perform work when it should

#119 recursion-ninja closed 5 years ago
1
Refactor phylocomgraph Test utility module to pcg-utilities library

#118 Boarders closed 5 years ago
1