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I was trying copyVAE on two different datasets to get an idea for its performance and noticed a few small things that I wanted to point out, as potential improvement suggestions or in case someone els…
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editor preferred term: Ion Torrent Ion Proton
alternative terms: Ion Torrent Proton, Ion Proton System, Ion Proton
textual definition: Ion Torrent Ion Proton is a semiconductor sequencing technology…
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Hi Ben,
This is probably a dumb question... Does it matter which stage before sequencing we use DNA concentrations for 'decontam'? For example, should I use the DNA concentration of the extract its…
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Shapeit4 gave me an error on one chromosome:
> ERROR: Could not find conditioning haplotypes for [sample_137739] / check options --pbwt-* and --ibd2-*
` shapeit4 --input DNA.phased.chr3.bcf --ma…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Hi there!
I selected all the ancient leprosy samples and downloaded the different tables and I noticed that Neukamm2020 was absent. I went back to AMDirT viewer and when you click on "Neukamm2020" (f…
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This issue is for keeping track of options for sequencing my DNA. Unfortunately, it seems all known methods require me to grant rights to my genes to the sequencing organization (including some copyr…
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Hi,
Could you provide the code on how to convert the original GEO data to 2 DNA sequencing + 2 RNA sequencing files to directly apply your scripts here ? Thanks.
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My experimental data is not whole genome sequencing but restriction site-associated DNA sequencing (RAD-seq), and I would like to know if I can use your software under such conditions.
Thanks again!